←Back to structures
IMGVR_UViG_2791355014_000001-2791355014-2792331254
Arc-VirIMGVR_UViG_2791355014_000001-2791355014-2792331254
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-67
D2
high
residues 71-133
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3v7dD01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.77 | 55.0 | 4.70e-01 | 76.2% | 49.0% |
| 1wj7A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 50.0 | 5.16e-01 | 90.5% | 90.0% |
| 1cm0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 50.0 | 3.71e-01 | 88.9% | 92.0% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.60 | 44.0 | 3.05e-01 | 82.5% | 29.8% |
| 1rfzA00 | 1.10.3760.10 | Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like | 0.58 | 41.0 | 3.16e-01 | 76.2% | 35.4% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.57 | 46.0 | 4.67e-01 | 87.3% | 87.5% |
| 4ociA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 39.0 | 3.90e-01 | 76.2% | 90.9% |
| 2ctdA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 34.0 | 2.99e-01 | 73.0% | 37.5% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.48e-01 | 84.1% | 55.3% |
| 2ihmA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.54 | 37.0 | 3.66e-01 | 73.0% | 92.8% |
| 1v87A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 3.78e-01 | 93.7% | 63.5% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 40.0 | 3.05e-01 | 84.1% | 47.6% |
| 2euiA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.46e-01 | 95.2% | 75.0% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.54e-01 | 84.1% | 70.5% |
| 4f9cA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.18e-01 | 96.8% | 41.3% |
| 1xd7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.64e-01 | 96.8% | 86.2% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.51 | 35.0 | 3.49e-01 | 76.2% | 72.3% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.66e-01 | 100.0% | 67.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4182238 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.68 | 50.0 | 4.45e-01 | 76.2% | 72.9% |
| 4489811 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.68 | 45.0 | 4.88e-01 | 76.2% | 86.0% |
| 4033799 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.66 | 46.0 | 4.96e-01 | 76.2% | 94.0% |
| 5077890 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.62 | 51.0 | 4.10e-01 | 93.7% | 69.8% |
| 3264227 | 108.1.1.1 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 | 0.62 | 43.0 | 3.96e-01 | 76.2% | 96.7% |
| 3983551 | 375.1.1.54 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thr_synth_N | 0.62 | 48.0 | 3.42e-01 | 88.9% | 87.7% |
| 4506746 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.61 | 44.0 | 3.13e-01 | 76.2% | 40.5% |
| 4969656 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.61 | 50.0 | 4.02e-01 | 93.7% | 69.8% |
| 3251424 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.61 | 43.0 | 4.14e-01 | 76.2% | 87.8% |
| 5081075 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.60 | 43.0 | 2.85e-01 | 76.2% | 33.1% |
| 5074995 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.59 | 48.0 | 3.76e-01 | 90.5% | 68.1% |
| 5037044 | 2003.4.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Thr_synth_N | 0.59 | 46.0 | 3.20e-01 | 88.9% | 73.2% |
| 3742484 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.59 | 40.0 | 4.03e-01 | 73.0% | 69.2% |
| 3523524 | 304.9.1.37 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PNMA | 0.58 | 40.0 | 4.00e-01 | 71.4% | 98.5% |
| 3970066 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.67e-01 | 93.7% | 97.0% |
| 4972696 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 40.0 | 4.03e-01 | 93.7% | 74.6% |
| 4994146 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 46.0 | 3.69e-01 | 92.1% | 64.2% |
| None | — | 0.55 | 42.0 | 3.82e-01 | 90.5% | 61.2% | |
| 3308828 | 375.1.9.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › PLAC8 | 0.55 | 39.0 | 3.49e-01 | 77.8% | 76.8% |
| 3920267 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.43e-01 | 71.4% | 60.0% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.62e-01 | 93.7% | 57.9% |
| 3996571 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.52 | 36.0 | 3.90e-01 | 73.0% | 100.0% |
| 3587004 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.52 | 44.0 | 3.49e-01 | 100.0% | 92.6% |
| 3949819 | 101.1.2.200 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_65 | 0.52 | 41.0 | 4.17e-01 | 100.0% | 91.7% |
| 3709753 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.51 | 37.0 | 3.51e-01 | 82.5% | 92.5% |
| 4012484 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.50 | 41.0 | 3.27e-01 | 100.0% | 73.5% |
| 4017109 | 386.1.1.261 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26082 | 0.50 | 39.0 | 2.75e-01 | 88.9% | 92.7% |
| 5054338 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.50 | 42.0 | 2.60e-01 | 96.8% | 33.1% |