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IMGVR_UViG_2791355073_000002-2791355073-2792546657

Arc-Vir

IMGVR_UViG_2791355073_000002-2791355073-2792546657

Identity

Kingdom:
archaea

Quality

75.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-93
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 61.0 4.45e-01 94.5% 68.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.68 56.0 4.63e-01 96.4% 91.5%
1wlyA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.68 56.0 3.90e-01 90.9% 39.4%
5dovB01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.68 55.0 3.78e-01 90.9% 42.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.79e-01 94.5% 59.5%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 55.0 4.78e-01 92.7% 93.0%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 55.0 4.56e-01 100.0% 75.5%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 50.0 3.88e-01 85.5% 78.7%
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.64 53.0 3.85e-01 94.5% 46.7%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 45.0 3.38e-01 76.4% 85.3%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.84e-01 87.3% 80.6%
4dupA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.61 49.0 3.44e-01 90.9% 40.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 48.0 3.84e-01 94.5% 56.7%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 50.0 4.28e-01 92.7% 93.3%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 41.0 3.54e-01 76.4% 98.9%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.40e-01 96.4% 63.9%
2xtlA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.75e-01 92.7% 82.5%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.81e-01 98.2% 77.5%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.96e-01 98.2% 81.1%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.07e-01 98.2% 92.6%
4yfbC01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 39.0 2.56e-01 74.5% 87.8%
4q66A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.99e-01 94.5% 90.2%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.57 40.0 2.89e-01 78.2% 98.4%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.84e-01 96.4% 86.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 38.0 3.69e-01 70.9% 63.3%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.17e-01 92.7% 87.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.56 38.0 3.37e-01 72.7% 85.5%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.00e-01 98.2% 96.6%
1x3dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.69e-01 98.2% 76.3%
1wfuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.80e-01 92.7% 95.8%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 3.11e-01 89.1% 52.1%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 42.0 3.03e-01 94.5% 82.9%
4n5uA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.67e-01 98.2% 88.0%
1wk0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.58e-01 98.2% 84.9%
2yuwA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.80e-01 100.0% 94.9%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.27e-01 76.4% 72.0%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.16e-01 96.4% 84.0%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.78e-01 98.2% 96.8%
1x5hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.41e-01 98.2% 71.2%
1k85A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.78e-01 96.4% 93.2%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 3.12e-01 72.7% 100.0%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.18e-01 87.3% 63.3%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 3.75e-01 96.4% 91.7%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.53 39.0 3.66e-01 81.8% 67.6%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.22e-01 92.7% 73.7%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.48e-01 87.3% 24.2%
2dleA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.69e-01 94.5% 96.5%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.52 43.0 2.91e-01 98.2% 26.4%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 41.0 3.86e-01 90.9% 72.5%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.62e-01 94.5% 93.4%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 38.0 3.07e-01 89.1% 88.9%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.46e-01 98.2% 83.2%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 44.0 3.22e-01 96.4% 85.8%
1x4xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.49e-01 98.2% 83.0%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.76e-01 94.5% 93.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.18e-01 94.5% 50.5%
4980462 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 62.0 4.70e-01 94.5% 67.2%
4987517 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.72 62.0 4.65e-01 94.5% 65.9%
4954140 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 4.50e-01 94.5% 65.4%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.69 58.0 4.72e-01 94.5% 53.3%
4990538 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 4.53e-01 94.5% 65.0%
3587555 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.14e-01 94.5% 52.9%
3629316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.09e-01 94.5% 44.0%
4622062 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 3.65e-01 94.5% 23.8%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 3.31e-01 96.4% 20.9%
4951886 3174.4.1.0 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.66 54.0 4.62e-01 92.7% 58.9%
3707978 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.64 40.0 2.77e-01 76.4% 17.9%
3729666 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.00e-01 94.5% 43.6%
None 0.63 54.0 3.61e-01 98.2% 47.0%
5018104 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.63 52.0 3.22e-01 96.4% 60.8%
3317821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.79e-01 92.7% 73.3%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.02e-01 72.7% 57.1%
3786247 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.62 53.0 3.62e-01 100.0% 77.7%
3445677 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 47.0 3.19e-01 85.5% 23.1%
5020601 236.1.1.0 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.61 51.0 3.60e-01 96.4% 85.9%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.66e-01 100.0% 65.9%
3482796 6070.1.1.0 few secondary structure elements › Sortilin C-terminal domain › Sortilin C-terminal domain › Sortilin C-terminal domain 0.61 41.0 4.63e-01 70.9% 100.0%
3483361 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.30e-01 98.2% 92.6%
152653 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 50.0 4.28e-01 92.7% 93.3%
3578695 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.60 48.0 4.20e-01 92.7% 70.0%
3252847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 4.11e-01 87.3% 96.5%
3788453 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 46.0 2.89e-01 83.6% 33.7%
3587340 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 45.0 3.95e-01 83.6% 64.7%
3443821 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.59 45.0 3.57e-01 85.5% 45.8%
3892161 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 49.0 3.84e-01 98.2% 70.8%
3583260 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.58 38.0 3.04e-01 83.6% 32.2%
3635097 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.58 49.0 3.03e-01 94.5% 29.7%
3633368 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.58 42.0 3.27e-01 80.0% 51.9%
1764115 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 31.0 3.38e-01 76.4% 60.9%
3222665 11.1.1.859 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3 0.58 48.0 2.99e-01 98.2% 25.0%
3700578 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 37.0 3.69e-01 78.2% 60.0%
3231860 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.74e-01 94.5% 68.3%
3247601 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.57 42.0 2.60e-01 83.6% 12.9%
3342456 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.57 31.0 3.39e-01 76.4% 62.2%
3200177 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 2.77e-01 90.9% 29.9%
3586304 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 41.0 3.12e-01 78.2% 51.5%
3458523 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.56 39.0 3.21e-01 76.4% 40.0%
3585937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.88e-01 78.2% 98.5%
3796614 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 42.0 2.71e-01 85.5% 29.3%
3860768 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 45.0 3.90e-01 98.2% 94.7%
4241432 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 45.0 3.62e-01 100.0% 76.0%
1526 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.59e-01 96.4% 78.3%
3760460 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 38.0 3.58e-01 74.5% 63.2%
3187813 220.1.1.204 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 0.54 43.0 3.59e-01 98.2% 62.6%
4972821 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.53 41.0 3.24e-01 85.5% 40.0%
3408253 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 43.0 3.55e-01 98.2% 84.3%
3935252 11.1.1.957 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_6th 0.53 42.0 3.49e-01 94.5% 92.2%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 41.0 3.66e-01 90.9% 68.2%
3173222 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.52 42.0 3.45e-01 96.4% 82.6%
3576175 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 40.0 3.64e-01 90.9% 93.8%
3827629 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 36.0 3.29e-01 74.5% 64.0%
3431969 708.1.1.8 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.51 36.0 2.91e-01 76.4% 60.0%
3596890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.29e-01 100.0% 80.7%
3744268 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 38.0 2.96e-01 85.5% 80.7%
3279657 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.50 42.0 3.19e-01 94.5% 96.3%
3722808 192.7.1.40 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › APH 0.50 38.0 2.90e-01 85.5% 62.1%