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IMGVR_UViG_2799112903_000001-2799112903-2800860706
Arc-VirIMGVR_UViG_2799112903_000001-2799112903-2800860706
Identity
- Kingdom:
- archaea
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-55
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01520.24 best | Amidase_3 | 48.9 | 1.20e-12 | 95.8% | 26.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jwqA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.98 | 93.0 | 6.01e-01 | 100.0% | 27.9% |
| 4rn7A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.98 | 93.0 | 5.97e-01 | 100.0% | 26.9% |
| 8c0jA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.97 | 91.0 | 5.78e-01 | 100.0% | 25.1% |
| 3ne8A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.95 | 89.0 | 5.49e-01 | 100.0% | 21.7% |
| 3qkiB01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.68 | 57.0 | 3.40e-01 | 100.0% | 19.7% |
| 2w7yA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 49.0 | 3.30e-01 | 100.0% | 20.5% |
| 2q1sA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 54.0 | 3.50e-01 | 100.0% | 19.8% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 55.0 | 3.63e-01 | 100.0% | 22.9% |
| 1p5hA01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.65 | 55.0 | 3.36e-01 | 100.0% | 24.2% |
| 1bwpA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 47.0 | 3.14e-01 | 100.0% | 19.8% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 48.0 | 3.37e-01 | 97.9% | 25.7% |
| 1uuqA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 51.0 | 3.06e-01 | 100.0% | 13.4% |
| 1l9xA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.61 | 53.0 | 3.26e-01 | 97.9% | 33.7% |
| 2hrzA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 52.0 | 3.40e-01 | 97.9% | 22.6% |
| 1e6uA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 51.0 | 3.32e-01 | 100.0% | 27.7% |
| 5u4qB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 51.0 | 3.15e-01 | 100.0% | 18.8% |
| 2yy7A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 3.13e-01 | 100.0% | 31.4% |
| 5l9aB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 3.07e-01 | 100.0% | 30.3% |
| 8hi4A03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 48.0 | 3.31e-01 | 100.0% | 50.5% |
| 3aw9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 48.0 | 3.27e-01 | 100.0% | 28.9% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 3.31e-01 | 100.0% | 27.5% |
| 4b8wB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 48.0 | 3.22e-01 | 100.0% | 30.4% |
| 4d8qF03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.56 | 45.0 | 3.30e-01 | 100.0% | 40.1% |
| 7jpjB01 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.54 | 47.0 | 2.98e-01 | 100.0% | 34.1% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.53 | 46.0 | 3.68e-01 | 100.0% | 73.3% |
| 6g85A01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 44.0 | 3.10e-01 | 95.8% | 72.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1406254 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.98 | 93.0 | 5.97e-01 | 100.0% | 26.9% |
| 4005299 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.98 | 93.0 | 5.59e-01 | 100.0% | 18.5% |
| 4180517 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.97 | 90.0 | 5.82e-01 | 100.0% | 26.1% |
| 4230376 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.96 | 90.0 | 5.84e-01 | 100.0% | 27.2% |
| 139841 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.95 | 89.0 | 5.49e-01 | 100.0% | 21.7% |
| 4030859 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.87 | 80.0 | 5.18e-01 | 100.0% | 25.3% |
| 3429775 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.75 | 50.0 | 3.32e-01 | 100.0% | 17.8% |
| 5044499 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.74 | 57.0 | 3.88e-01 | 100.0% | 22.7% |
| 3234938 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.71 | 60.0 | 3.92e-01 | 100.0% | 22.7% |
| 4984088 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.69 | 58.0 | 3.41e-01 | 95.8% | 19.7% |
| 3256073 | 2007.15.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF4062 | 0.68 | 52.0 | 3.47e-01 | 97.9% | 20.5% |
| 3689807 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 55.0 | 3.83e-01 | 95.8% | 42.9% |
| 4169393 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.66 | 56.0 | 3.22e-01 | 100.0% | 9.1% |
| 4503774 | 2003.1.1.152 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, GDP_Man_Dehyd | 0.64 | 52.0 | 3.27e-01 | 100.0% | 15.9% |
| 4955421 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.63 | 48.0 | 3.05e-01 | 100.0% | 14.8% |
| 3707856 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 52.0 | 4.06e-01 | 100.0% | 80.0% |
| None | — | 0.61 | 51.0 | 3.18e-01 | 100.0% | 32.9% | |
| None | — | 0.60 | 52.0 | 3.53e-01 | 100.0% | 28.6% | |
| 4494002 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.60 | 47.0 | 3.77e-01 | 100.0% | 43.3% |
| None | — | 0.59 | 49.0 | 3.30e-01 | 100.0% | 25.4% | |
| 3950240 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.58 | 50.0 | 3.10e-01 | 97.9% | 31.0% |
| 4634501 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.57 | 44.0 | 3.83e-01 | 100.0% | 52.5% |
| 3717015 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 48.0 | 3.33e-01 | 100.0% | 29.2% |
| None | — | 0.55 | 42.0 | 2.55e-01 | 95.8% | 10.9% | |
| 3710814 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 46.0 | 3.60e-01 | 100.0% | 41.7% |
| 3425435 | 207.1.1.192 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1, LRR_At5g56370 | 0.53 | 43.0 | 2.56e-01 | 100.0% | 10.1% |
| 4946783 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.51 | 42.0 | 2.58e-01 | 100.0% | 72.8% |
| 5047716 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.50 | 39.0 | 2.78e-01 | 100.0% | 24.6% |