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IMGVR_UViG_2799112903_000002-2799112903-2800861050

Arc-Vir

IMGVR_UViG_2799112903_000002-2799112903-2800861050

Identity

Kingdom:
archaea

Quality

86.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-46_79-154
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05133.20 best SPP1_portal 31.0 2.10e-07 95.6% 18.6%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ou7A00 1.10.8.1180 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 32.0 3.58e-01 74.7% 59.2%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 20.0 3.11e-01 93.4% 78.4%
1wruA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.56 30.0 3.08e-01 97.8% 50.0%
6b4rA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 45.0 3.28e-01 91.2% 59.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 2.92e-01 91.2% 94.2%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 43.0 2.90e-01 92.3% 94.2%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 42.0 3.20e-01 93.4% 86.6%
2zcaA00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.50 35.0 2.95e-01 71.4% 80.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4359328 142.1.1.44 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › GerPC 0.60 42.0 4.12e-01 73.6% 66.0%
3270568 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.60 45.0 3.11e-01 80.2% 74.9%
3975961 5058.1.1.88 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 0.59 42.0 4.12e-01 75.8% 99.0%
4627178 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 42.0 2.57e-01 80.2% 17.7%
3224463 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.57 34.0 2.86e-01 74.7% 33.5%
4021836 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 47.0 3.13e-01 92.3% 96.4%
3179508 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 43.0 2.87e-01 83.5% 94.8%
4996194 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.56 41.0 4.16e-01 79.1% 96.7%
4029364 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 42.0 2.54e-01 82.4% 24.9%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.54 35.0 3.53e-01 75.8% 63.2%
3592308 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.53 43.0 3.45e-01 89.0% 79.4%
D2 medium residues 155-242
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.64 50.0 4.26e-01 83.0% 66.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 51.0 4.03e-01 95.5% 41.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.88e-01 73.9% 84.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.60 37.0 4.47e-01 71.6% 94.9%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 43.0 3.61e-01 87.5% 45.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.19e-01 97.7% 38.1%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.67e-01 75.0% 80.2%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.27e-01 89.8% 97.2%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.55 39.0 3.48e-01 73.9% 56.0%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.57e-01 97.7% 74.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.64e-01 78.4% 77.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 44.0 4.05e-01 88.6% 90.6%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.98e-01 88.6% 45.5%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 39.0 2.80e-01 76.1% 47.3%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.09e-01 87.5% 39.7%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.54 47.0 3.39e-01 97.7% 52.9%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 48.0 4.06e-01 100.0% 87.8%
1j7dA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 45.0 3.92e-01 97.7% 68.6%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.00e-01 86.4% 39.5%
1ms5B02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.31e-01 98.9% 48.0%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.63e-01 98.9% 62.6%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 46.0 3.54e-01 98.9% 61.2%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.17e-01 72.7% 93.8%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.69e-01 80.7% 82.5%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.55e-01 100.0% 63.3%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.34e-01 98.9% 56.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034609 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.80 70.0 6.42e-01 100.0% 74.5%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 52.0 4.31e-01 73.9% 72.0%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.70 40.0 4.94e-01 71.6% 98.0%
3913149 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.68 52.0 4.33e-01 81.8% 80.0%
4567929 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.67 51.0 3.30e-01 79.5% 63.0%
3742122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 50.0 3.98e-01 77.3% 79.4%
3892129 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.66 51.0 4.36e-01 83.0% 68.6%
3625971 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.65 50.0 4.24e-01 83.0% 66.2%
3490141 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.65 50.0 4.24e-01 83.0% 66.2%
3347601 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.64 50.0 4.16e-01 83.0% 62.6%
3509852 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.64 57.0 3.87e-01 96.6% 63.6%
3602976 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 37.0 4.55e-01 80.7% 92.7%
4957121 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 38.0 4.32e-01 81.8% 81.5%
3634173 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.63 52.0 4.27e-01 88.6% 62.6%
4978638 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.62 45.0 3.57e-01 75.0% 94.7%
5017070 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.62 45.0 3.58e-01 76.1% 74.7%
3591236 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.20e-01 95.5% 22.4%
3498461 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 54.0 3.59e-01 97.7% 54.5%
3711119 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.62 46.0 4.25e-01 95.5% 60.9%
3309970 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 54.0 3.65e-01 98.9% 48.2%
3694146 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 56.0 4.27e-01 97.7% 89.2%
3707067 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 50.0 3.68e-01 87.5% 75.1%
3946522 9.1.1.36 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.60 46.0 3.87e-01 83.0% 53.5%
3852280 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 54.0 3.65e-01 97.7% 74.8%
3609745 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 45.0 4.03e-01 80.7% 67.2%
3742201 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 46.0 3.97e-01 83.0% 65.9%
3400954 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 52.0 3.52e-01 97.7% 75.9%
3510355 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 51.0 4.59e-01 96.6% 72.5%
4992265 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.58 43.0 3.57e-01 78.4% 96.2%
3878495 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.58 48.0 3.57e-01 88.6% 59.5%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.58 53.0 4.08e-01 100.0% 83.7%
3970330 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 41.0 3.55e-01 73.9% 95.6%
4181312 231.1.2.3 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ 0.58 42.0 3.04e-01 77.3% 34.9%
4028055 206.1.1.87 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.57 47.0 3.09e-01 90.9% 32.7%
3195138 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 50.0 3.29e-01 97.7% 76.9%
4976136 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 42.0 4.11e-01 83.0% 71.6%
3728206 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 50.0 3.32e-01 97.7% 75.2%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.57 41.0 4.24e-01 76.1% 91.8%
4949745 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 49.0 3.49e-01 94.3% 56.5%
3739945 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.56 49.0 3.26e-01 98.9% 85.3%
3798461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.98e-01 84.1% 92.5%
3899494 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.59e-01 77.3% 82.3%
3536412 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.44e-01 76.1% 72.1%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.53e-01 77.3% 90.0%
3276429 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 47.0 3.23e-01 97.7% 55.8%
3520218 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 38.0 3.47e-01 75.0% 95.8%
4019707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.20e-01 79.5% 62.4%
3552840 11.1.1.795 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.51 40.0 3.35e-01 85.2% 51.2%
3421524 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.92e-01 98.9% 58.7%
4991405 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 45.0 2.96e-01 98.9% 84.2%
3874721 5.1.4.533 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FANCAA 0.51 40.0 3.36e-01 87.5% 51.2%
4993981 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.51 40.0 4.19e-01 85.2% 96.2%
3577548 331.12.1.0 a+b two layers › TBP-like › YugN-like › YugN-like 0.50 41.0 3.85e-01 92.0% 83.2%
3552666 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.50 44.0 3.51e-01 98.9% 57.8%
3896234 11.1.1.795 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.50 39.0 3.29e-01 87.5% 50.9%
3921085 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.50 36.0 3.24e-01 78.4% 86.7%