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IMGVR_UViG_2799112903_000003-2799112903-2800859067
Arc-VirIMGVR_UViG_2799112903_000003-2799112903-2800859067
Identity
- Kingdom:
- archaea
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-39
Domain cluster:
representative
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wshA00 | 3.40.1440.40 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.73 | 55.0 | 3.79e-01 | 100.0% | 23.1% |
| 2dzmA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.71 | 48.0 | 3.90e-01 | 71.4% | 88.9% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 54.0 | 4.23e-01 | 100.0% | 39.8% |
| 1w6kA01 | 6.20.120.20 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 44.0 | 3.92e-01 | 71.4% | 42.0% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 57.0 | 4.46e-01 | 100.0% | 78.6% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.68 | 47.0 | 2.79e-01 | 77.1% | 76.6% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.67 | 56.0 | 4.45e-01 | 100.0% | 46.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.66 | 52.0 | 4.07e-01 | 100.0% | 78.3% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 54.0 | 5.29e-01 | 100.0% | 94.9% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.64 | 50.0 | 2.94e-01 | 97.1% | 51.2% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 49.0 | 3.97e-01 | 100.0% | 87.1% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 42.0 | 2.78e-01 | 88.6% | 16.6% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 50.0 | 3.18e-01 | 97.1% | 56.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 47.0 | 4.00e-01 | 100.0% | 53.9% |
| 7oode01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 51.0 | 4.22e-01 | 97.1% | 80.9% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.62 | 45.0 | 4.14e-01 | 85.7% | 59.6% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.62 | 48.0 | 3.24e-01 | 100.0% | 21.6% |
| 3up1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 48.0 | 3.53e-01 | 91.4% | 76.9% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 49.0 | 3.54e-01 | 100.0% | 33.1% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 43.0 | 2.44e-01 | 77.1% | 21.8% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.60 | 48.0 | 2.90e-01 | 100.0% | 11.4% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 46.0 | 3.56e-01 | 91.4% | 54.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 46.0 | 3.58e-01 | 100.0% | 40.4% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 3.89e-01 | 100.0% | 64.5% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 3.49e-01 | 91.4% | 39.0% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 46.0 | 3.77e-01 | 100.0% | 90.7% |
| 1a70A00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.58 | 45.0 | 3.46e-01 | 100.0% | 80.4% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 2.77e-01 | 85.7% | 51.9% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 44.0 | 2.93e-01 | 85.7% | 27.9% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 3.01e-01 | 100.0% | 92.6% |
| 1xexB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 42.0 | 2.83e-01 | 94.3% | 19.9% |
| 3k0yA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.56 | 45.0 | 3.16e-01 | 100.0% | 59.4% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 44.0 | 3.21e-01 | 97.1% | 45.4% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 40.0 | 2.24e-01 | 74.3% | 74.5% |
| 4kdiD00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 43.0 | 3.57e-01 | 97.1% | 76.0% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.55 | 42.0 | 2.73e-01 | 97.1% | 68.6% |
| 1e7uA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 44.0 | 2.94e-01 | 100.0% | 49.1% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.08e-01 | 88.6% | 31.2% |
| 2fnjB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 41.0 | 3.19e-01 | 97.1% | 55.1% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 41.0 | 3.87e-01 | 100.0% | 68.9% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.54 | 45.0 | 2.65e-01 | 100.0% | 59.1% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 39.0 | 2.94e-01 | 82.9% | 32.9% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.26e-01 | 74.3% | 10.1% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.53 | 40.0 | 3.07e-01 | 100.0% | 32.7% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 39.0 | 3.15e-01 | 88.6% | 45.1% |
| 1vrmA01 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.53 | 42.0 | 2.71e-01 | 100.0% | 16.8% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.53 | 44.0 | 3.50e-01 | 100.0% | 62.8% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.53 | 38.0 | 3.00e-01 | 85.7% | 46.2% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.52 | 41.0 | 2.60e-01 | 91.4% | 54.3% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 39.0 | 2.95e-01 | 94.3% | 56.6% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.51 | 39.0 | 3.51e-01 | 100.0% | 58.2% |
| 4n01A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 40.0 | 2.92e-01 | 100.0% | 76.1% |
| 4p6zM01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 36.0 | 2.79e-01 | 100.0% | 75.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945024 | 2007.1.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase1_like | 0.71 | 49.0 | 2.92e-01 | 74.3% | 85.2% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.70 | 56.0 | 4.78e-01 | 100.0% | 92.3% |
| 5059379 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.68 | 54.0 | 4.56e-01 | 100.0% | 82.9% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 54.0 | 4.86e-01 | 100.0% | 74.5% |
| 5043001 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.67 | 46.0 | 3.23e-01 | 91.4% | 23.8% |
| 3679515 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 50.0 | 4.88e-01 | 100.0% | 91.1% |
| 3482807 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.65 | 51.0 | 3.88e-01 | 100.0% | 75.0% |
| 3233262 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.65 | 51.0 | 5.17e-01 | 97.1% | 91.4% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 49.0 | 2.97e-01 | 85.7% | 48.4% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.64 | 50.0 | 4.15e-01 | 100.0% | 49.3% |
| 5001130 | 101.1.2.44 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 | 0.64 | 50.0 | 3.79e-01 | 94.3% | 41.0% |
| 4364399 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.63 | 52.0 | 3.88e-01 | 94.3% | 63.3% |
| None | — | 0.61 | 46.0 | 2.71e-01 | 85.7% | 43.2% | |
| 4374416 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 48.0 | 2.65e-01 | 100.0% | 6.7% |
| 3932224 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.60 | 45.0 | 2.66e-01 | 85.7% | 62.6% |
| 3497120 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 48.0 | 3.67e-01 | 100.0% | 47.4% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.59 | 46.0 | 2.97e-01 | 85.7% | 44.4% |
| 3793671 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.59 | 43.0 | 3.51e-01 | 100.0% | 37.6% |
| 4931277 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.59 | 48.0 | 3.23e-01 | 100.0% | 45.8% |
| 3818641 | 109.4.1.2070 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, E_motif | 0.59 | 40.0 | 2.30e-01 | 100.0% | 7.0% |
| 3520453 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 43.0 | 2.97e-01 | 91.4% | 22.3% |
| 3605370 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.58 | 46.0 | 4.09e-01 | 100.0% | 66.7% |
| 3223768 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 45.0 | 3.95e-01 | 100.0% | 89.2% |
| 4803436 | 4300.1.1.15 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD | 0.57 | 42.0 | 3.33e-01 | 91.4% | 37.5% |
| 5025607 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.56 | 45.0 | 2.87e-01 | 91.4% | 29.2% |
| 3990521 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.56 | 42.0 | 2.71e-01 | 80.0% | 45.1% |
| 4142311 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.56 | 39.0 | 2.15e-01 | 97.1% | 4.3% |
| 3781912 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.56 | 43.0 | 3.64e-01 | 97.1% | 75.7% |
| 1387073 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.55 | 40.0 | 3.24e-01 | 94.3% | 92.3% |
| 3265018 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.54 | 39.0 | 2.98e-01 | 82.9% | 31.6% |
| 3309917 | 109.4.1.2594 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, PPR_long, E_motif | 0.53 | 42.0 | 2.39e-01 | 100.0% | 16.8% |
| 4989431 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.53 | 41.0 | 2.61e-01 | 91.4% | 41.9% |
| 3438127 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.53 | 40.0 | 2.30e-01 | 85.7% | 13.7% |
| 3623124 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.52 | 43.0 | 2.72e-01 | 100.0% | 20.5% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.52 | 45.0 | 3.49e-01 | 100.0% | 58.2% |