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IMGVR_UViG_2799112904_000001-2799112904-2800861648
Arc-VirIMGVR_UViG_2799112904_000001-2799112904-2800861648
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-212
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20600.4 best | ExoX-like_C | 32.8 | 5.10e-08 | 60.8% | 90.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.72 | 57.0 | 3.61e-01 | 86.3% | 32.9% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.70 | 50.0 | 3.80e-01 | 78.4% | 61.7% |
| 1nxcA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 50.0 | 2.92e-01 | 80.4% | 20.8% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.67 | 56.0 | 4.87e-01 | 100.0% | 82.4% |
| 6vw7B03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.63 | 52.0 | 4.57e-01 | 100.0% | 84.5% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.59 | 41.0 | 3.58e-01 | 76.5% | 89.7% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.58 | 46.0 | 4.03e-01 | 98.0% | 85.2% |
| 4avnA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.56 | 43.0 | 2.59e-01 | 90.2% | 17.4% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 2.80e-01 | 98.0% | 32.1% |
| 6hrdA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 2.69e-01 | 84.3% | 66.0% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 40.0 | 2.93e-01 | 98.0% | 88.0% |
| 2gshA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 42.0 | 3.09e-01 | 100.0% | 43.8% |
| 2g3aA01 | 1.20.5.540 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.50 | 26.0 | 3.12e-01 | 84.3% | 64.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4325828 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 59.0 | 4.05e-01 | 86.3% | 48.8% |
| 3518606 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.70 | 56.0 | 3.90e-01 | 90.2% | 48.2% |
| None | — | 0.69 | 57.0 | 3.54e-01 | 92.2% | 30.7% | |
| 3335640 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 55.0 | 5.05e-01 | 88.2% | 83.1% |
| 3303572 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 53.0 | 3.80e-01 | 86.3% | 60.0% |
| 3782837 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 56.0 | 3.05e-01 | 90.2% | 13.9% |
| 3611983 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 54.0 | 3.06e-01 | 90.2% | 33.8% |
| 4464903 | 109.4.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N | 0.66 | 54.0 | 3.23e-01 | 90.2% | 22.6% |
| 3813865 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.66 | 57.0 | 3.33e-01 | 100.0% | 14.9% |
| 3260131 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.65 | 53.0 | 3.31e-01 | 90.2% | 37.3% |
| 4016930 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.65 | 47.0 | 3.30e-01 | 82.4% | 23.6% |
| 5072218 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.64 | 54.0 | 3.21e-01 | 92.2% | 20.5% |
| 3670742 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 54.0 | 4.19e-01 | 100.0% | 81.7% |
| 3256199 | 109.4.1.54 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Cse1 | 0.61 | 46.0 | 2.84e-01 | 86.3% | 19.7% |
| 3852459 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.59 | 44.0 | 2.77e-01 | 84.3% | 31.5% |
| 3934215 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.58 | 42.0 | 2.81e-01 | 80.4% | 43.0% |
| 3406966 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.58 | 46.0 | 3.15e-01 | 98.0% | 61.8% |
| 3655741 | 7542.1.1.0 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain | 0.57 | 46.0 | 3.49e-01 | 92.2% | 72.8% |
| 3733446 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.56 | 44.0 | 3.74e-01 | 90.2% | 71.1% |
| 3262601 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.56 | 44.0 | 3.78e-01 | 90.2% | 74.1% |
| 5052529 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.54 | 40.0 | 2.61e-01 | 80.4% | 77.9% |
| 3605151 | 1189.1.1.3 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP | 0.54 | 39.0 | 2.73e-01 | 82.4% | 79.0% |
| 3423908 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.53 | 43.0 | 3.55e-01 | 90.2% | 82.1% |
D2
high
residues 220-273
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.76 | 59.0 | 5.58e-01 | 85.2% | 89.4% |
| 1wxqA02 | 1.10.8.470 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 47.0 | 4.03e-01 | 81.5% | 72.2% |
| 1qamA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.60 | 48.0 | 4.34e-01 | 92.6% | 96.2% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 47.0 | 4.69e-01 | 96.3% | 84.5% |
| 2lckA00 | 1.50.40.10 | Mainly Alpha › Alpha/alpha barrel › Mitochondrial carrier fold › Mitochondrial carrier domain | 0.51 | 41.0 | 2.68e-01 | 100.0% | 45.1% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 41.0 | 3.35e-01 | 100.0% | 47.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3253976 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 65.0 | 5.02e-01 | 100.0% | 91.7% |
| 3506034 | 170.2.1.29 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7083 | 0.71 | 54.0 | 4.60e-01 | 83.3% | 53.3% |
| 3574453 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.70 | 61.0 | 4.56e-01 | 100.0% | 82.9% |
| 3936724 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.69 | 50.0 | 4.57e-01 | 81.5% | 57.3% |
| 3804077 | 3722.1.1.3 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › DUF3490 | 0.68 | 54.0 | 4.85e-01 | 87.0% | 86.7% |
| 3934799 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.68 | 49.0 | 4.51e-01 | 81.5% | 57.3% |
| 3928625 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.68 | 50.0 | 4.57e-01 | 81.5% | 62.7% |
| 3557614 | 170.1.1.28 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF25914 | 0.66 | 56.0 | 5.44e-01 | 100.0% | 88.3% |
| 3573730 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.61 | 43.0 | 3.90e-01 | 79.6% | 52.5% |
| 3625144 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 42.0 | 3.98e-01 | 77.8% | 67.1% |
| 5081161 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 42.0 | 3.13e-01 | 77.8% | 52.9% |
| 3893344 | 605.1.1.228 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4554 | 0.58 | 43.0 | 4.20e-01 | 81.5% | 85.0% |
| 3256442 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.57 | 41.0 | 3.81e-01 | 81.5% | 90.7% |
D3
medium
residues 14-61_134-148
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.79 | 71.0 | 5.33e-01 | 100.0% | 86.5% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 38.0 | 3.25e-01 | 79.4% | 89.7% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.52 | 36.0 | 3.08e-01 | 98.4% | 39.5% |
| 1q5nA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.52 | 36.0 | 2.49e-01 | 74.6% | 86.0% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 36.0 | 2.70e-01 | 77.8% | 35.7% |
| 3kl0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 40.0 | 2.66e-01 | 88.9% | 42.4% |
| 4i62A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 35.0 | 2.78e-01 | 95.2% | 32.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1871052 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.79 | 71.0 | 5.02e-01 | 100.0% | 68.1% |
| 4018556 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.79 | 71.0 | 5.24e-01 | 100.0% | 81.2% |
| 3262206 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.78 | 70.0 | 5.15e-01 | 100.0% | 75.0% |
| 3219651 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 47.0 | 3.08e-01 | 92.1% | 86.5% |
| 3932839 | 193.1.1.43 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CAMSAP_CH, CH_CAMSAP2_N | 0.56 | 47.0 | 3.09e-01 | 96.8% | 90.3% |
| 4675781 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 42.0 | 2.75e-01 | 85.7% | 65.5% |
| 1381490 | 2002.1.1.86 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_59 | 0.51 | 43.0 | 2.81e-01 | 98.4% | 35.0% |
| 3484387 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.50 | 26.0 | 2.88e-01 | 73.0% | 52.0% |
D4
medium
residues 62-133
Domain cluster:
rep: CAKLQF020000053.1__CAH1097154.1__SAMEA5780031_04078__00001__D67-120
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.67 | 58.0 | 4.26e-01 | 100.0% | 41.9% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.66 | 41.0 | 4.60e-01 | 70.8% | 84.9% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 41.0 | 3.61e-01 | 84.7% | 46.8% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 53.0 | 4.59e-01 | 98.6% | 72.1% |
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.59 | 46.0 | 2.74e-01 | 86.1% | 97.1% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.42e-01 | 98.6% | 76.1% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.55e-01 | 100.0% | 84.8% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 50.0 | 4.36e-01 | 98.6% | 80.2% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.56 | 45.0 | 3.44e-01 | 90.3% | 86.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 49.0 | 4.29e-01 | 100.0% | 76.4% |
| 3q90B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.16e-01 | 100.0% | 39.2% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.26e-01 | 100.0% | 42.4% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 38.0 | 3.44e-01 | 73.6% | 86.1% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.26e-01 | 95.8% | 83.3% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 49.0 | 4.32e-01 | 100.0% | 79.4% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 46.0 | 4.15e-01 | 100.0% | 80.6% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.87e-01 | 97.2% | 86.0% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 46.0 | 4.08e-01 | 100.0% | 67.0% |
| 6c98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.19e-01 | 95.8% | 82.4% |
| 3f7xA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.34e-01 | 100.0% | 46.6% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 44.0 | 4.11e-01 | 98.6% | 77.8% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 37.0 | 2.95e-01 | 76.4% | 72.2% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 4.15e-01 | 95.8% | 81.8% |
| 3gzbA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.11e-01 | 100.0% | 39.6% |
| 1nt4A01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.51 | 44.0 | 3.12e-01 | 100.0% | 89.8% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 34.0 | 3.15e-01 | 70.8% | 55.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 44.0 | 3.67e-01 | 100.0% | 61.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957641 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.62 | 41.0 | 4.54e-01 | 94.4% | 89.1% |
| 3667392 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 52.0 | 4.54e-01 | 98.6% | 80.9% |
| 4025160 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 53.0 | 4.46e-01 | 98.6% | 72.8% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.60 | 54.0 | 4.78e-01 | 100.0% | 85.7% |
| 4988329 | 223.1.1.20 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3365 | 0.60 | 44.0 | 3.28e-01 | 81.9% | 30.0% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.60 | 53.0 | 4.53e-01 | 100.0% | 75.4% |
| 3282895 | 912.1.1.0 ↗ | few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain | 0.60 | 53.0 | 3.86e-01 | 100.0% | 67.2% |
| 3486569 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.60 | 44.0 | 3.08e-01 | 80.6% | 54.7% |
| 3599565 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 47.0 | 4.59e-01 | 100.0% | 78.8% |
| 3514330 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 47.0 | 4.26e-01 | 100.0% | 63.0% |
| 4958461 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 44.0 | 4.16e-01 | 98.6% | 64.4% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 52.0 | 4.40e-01 | 98.6% | 74.2% |
| 4324607 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.59 | 44.0 | 3.44e-01 | 80.6% | 37.5% |
| 3817782 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 49.0 | 4.02e-01 | 95.8% | 75.0% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 52.0 | 4.15e-01 | 98.6% | 62.9% |
| 4944943 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.58 | 50.0 | 4.64e-01 | 100.0% | 76.8% |
| 2035523 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.57 | 50.0 | 4.38e-01 | 100.0% | 78.6% |
| 3169657 | 4099.1.1.47 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 | 0.57 | 43.0 | 3.79e-01 | 98.6% | 53.0% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 49.0 | 4.32e-01 | 98.6% | 79.8% |
| 4122961 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.56 | 49.0 | 4.43e-01 | 100.0% | 83.0% |
| 4277262 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 49.0 | 4.20e-01 | 100.0% | 73.7% |
| 3632708 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.54 | 47.0 | 2.94e-01 | 100.0% | 30.2% |
| 3608162 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 46.0 | 3.55e-01 | 95.8% | 84.2% |
| 4068016 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.53 | 46.0 | 4.12e-01 | 100.0% | 82.9% |
| 4965901 | 331.2.1.15 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 | 0.53 | 48.0 | 3.60e-01 | 100.0% | 41.7% |
| 3703275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 45.0 | 3.91e-01 | 97.2% | 84.3% |
| 3249225 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 44.0 | 3.42e-01 | 94.4% | 45.6% |
| 4948537 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 39.0 | 2.53e-01 | 98.6% | 17.2% |
| 3389619 | 223.1.1.69 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N | 0.51 | 37.0 | 2.68e-01 | 79.2% | 27.9% |
| 1537326 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 38.0 | 3.11e-01 | 100.0% | 39.6% |