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IMGVR_UViG_2799112904_000001-2799112904-2800861677

Arc-Vir

IMGVR_UViG_2799112904_000001-2799112904-2800861677

Identity

Kingdom:
archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-74
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ziuA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.70 44.0 3.01e-01 100.0% 18.7%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 51.0 5.50e-01 100.0% 98.3%
5zrcA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 57.0 4.69e-01 100.0% 64.5%
5ah5A01 3.10.20.590 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 51.0 5.35e-01 100.0% 98.4%
1luzA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.97e-01 100.0% 56.5%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 50.0 3.62e-01 91.3% 51.2%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 53.0 5.01e-01 98.6% 79.1%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.61 52.0 4.75e-01 98.6% 73.4%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.60 52.0 4.80e-01 98.6% 74.7%
4fk7A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.60 48.0 3.56e-01 91.3% 62.1%
3fjyA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 53.0 4.07e-01 100.0% 60.4%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.12e-01 75.4% 100.0%
3ebeB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.34e-01 79.7% 56.6%
4hwiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 52.0 5.15e-01 100.0% 98.6%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 43.0 3.17e-01 100.0% 28.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 3.62e-01 78.3% 53.3%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.57 46.0 3.34e-01 89.9% 59.9%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 4.07e-01 100.0% 60.7%
1vx7M00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.57 49.0 4.05e-01 100.0% 65.9%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 50.0 3.96e-01 100.0% 76.8%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 49.0 4.86e-01 100.0% 98.6%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 3.95e-01 100.0% 89.2%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.69e-01 100.0% 68.1%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 4.20e-01 98.6% 96.9%
1wh3A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 47.0 4.68e-01 100.0% 100.0%
6accA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.53 42.0 2.90e-01 89.9% 88.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.45e-01 79.7% 51.9%
4m01A02 3.10.20.320 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) 0.53 45.0 4.41e-01 98.6% 98.7%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 4.01e-01 100.0% 90.7%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 41.0 2.95e-01 89.9% 55.2%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 46.0 3.91e-01 98.6% 80.9%
7vqxR01 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.53 36.0 3.49e-01 100.0% 60.7%
6focH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.53 47.0 4.09e-01 100.0% 78.1%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.52 45.0 3.85e-01 100.0% 68.7%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.51 41.0 4.09e-01 98.6% 85.9%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.51 43.0 3.53e-01 100.0% 79.3%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 44.0 4.21e-01 98.6% 98.8%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.50 43.0 4.14e-01 100.0% 84.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068076 239.5.1.1 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.69 60.0 5.27e-01 100.0% 66.0%
3967756 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.68 55.0 5.53e-01 100.0% 85.7%
3265492 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.67 55.0 5.72e-01 100.0% 93.8%
4660526 239.5.1.1 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.67 56.0 5.43e-01 100.0% 82.5%
4327981 239.5.1.1 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.66 57.0 4.95e-01 100.0% 62.9%
3256699 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.66 58.0 4.68e-01 100.0% 61.5%
4995058 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.66 56.0 5.41e-01 100.0% 91.3%
4949238 239.5.1.1 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.65 55.0 4.15e-01 100.0% 38.2%
3309417 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.64 45.0 4.28e-01 75.4% 95.3%
4296285 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.64 51.0 5.39e-01 100.0% 98.3%
4074418 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.64 51.0 5.42e-01 98.6% 98.3%
4568828 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 55.0 4.92e-01 98.6% 73.0%
3383363 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.64 46.0 4.29e-01 78.3% 100.0%
4069101 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 56.0 4.93e-01 98.6% 70.0%
4344650 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 55.0 4.89e-01 98.6% 73.0%
3714758 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.63 50.0 3.50e-01 89.9% 44.1%
4134041 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 46.0 4.34e-01 79.7% 98.8%
4058810 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.62 50.0 5.16e-01 100.0% 93.8%
4452931 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 53.0 4.69e-01 98.6% 69.5%
5003529 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.62 49.0 5.20e-01 100.0% 98.3%
3503698 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.61 54.0 5.45e-01 100.0% 97.1%
3997676 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 4.11e-01 78.3% 88.9%
4232299 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 52.0 4.71e-01 98.6% 75.8%
4089549 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 52.0 4.71e-01 98.6% 73.7%
4139867 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 52.0 4.69e-01 98.6% 71.6%
3416672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 3.70e-01 79.7% 50.0%
4259249 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 53.0 4.73e-01 98.6% 74.7%
4083330 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 50.0 4.57e-01 98.6% 70.5%
4231034 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 53.0 4.68e-01 100.0% 70.0%
3252917 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.94e-01 71.0% 96.0%
3540253 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.59 40.0 3.69e-01 79.7% 52.6%
4937649 239.1.1.2 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e 0.59 53.0 4.44e-01 100.0% 94.8%
5055079 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.58 46.0 4.94e-01 98.6% 100.0%
3393738 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.58 51.0 5.15e-01 100.0% 97.1%
4433128 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 50.0 4.53e-01 97.1% 71.6%
4026086 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 50.0 4.44e-01 97.1% 100.0%
3169613 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 41.0 3.70e-01 76.8% 81.0%
3738532 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.57 42.0 3.97e-01 79.7% 81.2%
3276425 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.57 47.0 3.25e-01 98.6% 40.3%
4849375 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 39.0 4.26e-01 73.9% 92.6%
5035884 2004.6.1.1 a/b three-layered sandwiches › P-loop domains-like › C-terminal domain in a putative metallopeptidase YP_676511.1 › C-terminal domain in a putative metallopeptidase YP_676511.1 › MlrC_C 0.56 42.0 3.17e-01 91.3% 32.0%
4028369 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 50.0 4.70e-01 100.0% 83.5%
4404320 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.55 48.0 4.46e-01 100.0% 88.9%
3281134 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.55 47.0 3.97e-01 100.0% 69.6%
3706839 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.55 47.0 4.26e-01 100.0% 83.0%
3462034 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.55 47.0 4.05e-01 98.6% 72.2%
3689831 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.55 49.0 4.72e-01 100.0% 98.8%
3386689 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.55 46.0 4.47e-01 100.0% 92.5%
3675120 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 37.0 3.56e-01 98.6% 58.8%
4592145 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.54 45.0 4.40e-01 100.0% 91.3%
4126896 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 41.0 3.27e-01 82.6% 62.1%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 45.0 3.78e-01 98.6% 56.9%
3189183 2004.6.1.1 a/b three-layered sandwiches › P-loop domains-like › C-terminal domain in a putative metallopeptidase YP_676511.1 › C-terminal domain in a putative metallopeptidase YP_676511.1 › MlrC_C 0.53 42.0 3.13e-01 91.3% 31.8%
3561821 237.1.1.2 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.53 44.0 3.15e-01 100.0% 95.9%
4364052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.74e-01 94.2% 72.9%
3587465 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.53 47.0 4.27e-01 98.6% 96.7%
3896152 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.52 46.0 4.04e-01 100.0% 79.0%
3683948 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 45.0 4.06e-01 100.0% 78.6%
3699033 7579.1.1.28 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S28 0.50 36.0 2.39e-01 78.3% 33.7%
4101475 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.50 44.0 4.14e-01 100.0% 95.3%
164975 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.50 43.0 4.15e-01 100.0% 85.4%