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IMGVR_UViG_2799112911_000001-2799112911-2800876452

Arc-Vir

IMGVR_UViG_2799112911_000001-2799112911-2800876452

Identity

Kingdom:
archaea

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-299
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01609.28 best DDE_Tnp_1 51.6 1.50e-13 100.0% 66.5%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 43.0 4.06e-01 99.4% 59.9%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 4.08e-01 100.0% 58.9%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.60 48.0 4.91e-01 100.0% 85.2%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 31.0 3.71e-01 98.3% 75.4%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.57 37.0 3.97e-01 97.8% 74.7%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.56 32.0 4.08e-01 100.0% 96.1%
2vy9A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.56 33.0 4.07e-01 92.7% 91.2%
4yhsA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 35.0 3.98e-01 95.5% 84.9%
2qi2A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 33.0 4.08e-01 96.6% 92.1%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.55 47.0 4.77e-01 100.0% 91.0%
2qaiB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.53 27.0 3.48e-01 100.0% 89.0%
3ceaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 38.0 4.13e-01 98.3% 87.9%
2ht1A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 3.37e-01 70.2% 90.2%
2ph5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 3.91e-01 94.9% 82.7%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 35.0 3.89e-01 100.0% 91.2%
3qwbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 36.0 3.93e-01 96.1% 90.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006321 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.93 85.0 6.70e-01 100.0% 51.4%
4966198 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.85 50.0 4.42e-01 100.0% 42.2%
4958315 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.80 62.0 5.12e-01 100.0% 47.7%
3964553 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.78 45.0 5.03e-01 100.0% 72.1%
3970986 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 4.87e-01 100.0% 45.5%
3922382 2484.1.1.242 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rva_4 0.77 46.0 4.19e-01 100.0% 46.2%
5053144 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 67.0 5.37e-01 100.0% 49.7%
5005291 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 57.0 5.26e-01 100.0% 61.4%
5020443 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 61.0 5.00e-01 100.0% 49.2%
4954372 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 60.0 5.07e-01 100.0% 51.6%
4294687 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.75 41.0 5.04e-01 100.0% 82.6%
5005232 2484.1.1.332 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 0.75 54.0 4.52e-01 100.0% 45.3%
5027997 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.75 58.0 5.06e-01 100.0% 55.2%
4067862 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.74 42.0 5.17e-01 100.0% 87.0%
3989194 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.74 42.0 4.94e-01 100.0% 79.2%
4977119 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.74 59.0 5.40e-01 100.0% 65.3%
4679171 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.74 43.0 5.25e-01 100.0% 88.7%
5070929 2484.1.1.332 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 0.73 59.0 4.76e-01 100.0% 48.1%
5003854 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 43.0 5.26e-01 100.0% 91.3%
4492432 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 42.0 4.94e-01 100.0% 82.4%
5004369 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.71 66.0 5.34e-01 100.0% 55.6%
3509891 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.70 67.0 5.16e-01 100.0% 73.1%
3515684 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.70 38.0 4.02e-01 100.0% 58.1%
2887749 2484.1.1.219 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.70 47.0 4.27e-01 100.0% 51.9%
5017691 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.68 64.0 5.15e-01 100.0% 65.5%
3942981 2484.1.1.269 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4 0.68 64.0 4.92e-01 100.0% 54.1%
4161288 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 44.0 4.96e-01 100.0% 85.2%
5017703 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.67 64.0 5.10e-01 100.0% 62.2%
4992937 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.67 64.0 5.00e-01 100.0% 57.4%
5017696 2484.1.1.336 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4277 0.67 63.0 4.85e-01 100.0% 51.2%
5061579 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 62.0 4.85e-01 100.0% 60.6%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.66 62.0 4.49e-01 100.0% 54.3%
5078190 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.65 62.0 5.31e-01 100.0% 70.2%
5002475 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 61.0 4.73e-01 100.0% 53.5%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 60.0 4.73e-01 100.0% 51.3%
5019257 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 61.0 5.06e-01 100.0% 72.4%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 60.0 4.61e-01 100.0% 50.7%
3949232 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 60.0 4.58e-01 100.0% 57.9%
5053278 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.63 59.0 4.58e-01 100.0% 57.3%
5048020 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 60.0 4.67e-01 100.0% 56.8%
5063667 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 36.0 4.55e-01 99.4% 95.2%
None 0.61 41.0 3.92e-01 94.9% 58.6%
3932900 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.60 49.0 4.84e-01 95.5% 80.0%
3191394 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 37.0 4.21e-01 100.0% 84.6%
5064572 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.58 39.0 4.45e-01 100.0% 92.3%
4052313 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.56 33.0 4.16e-01 100.0% 98.1%
4967986 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 37.0 3.84e-01 100.0% 71.5%
4057121 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.55 35.0 4.08e-01 98.3% 89.6%
4619309 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.54 37.0 4.11e-01 100.0% 88.4%
4553891 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.54 34.0 4.00e-01 100.0% 90.4%
4983641 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 38.0 4.12e-01 100.0% 85.3%
5036343 2004.1.1.90 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobA_CobO_BtuR 0.53 25.0 3.48e-01 92.1% 95.0%
3466455 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.53 49.0 4.15e-01 100.0% 63.8%
3355851 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.52 48.0 3.96e-01 100.0% 58.3%
5054573 7529.1.1.0 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.51 34.0 3.94e-01 71.3% 93.1%
4278305 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.50 35.0 3.91e-01 100.0% 90.6%
4967895 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.50 37.0 3.83e-01 100.0% 81.8%
D2 medium residues 5-119
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.63 48.0 4.92e-01 90.4% 83.6%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 33.0 3.53e-01 70.4% 61.2%
4c0nA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 46.0 4.21e-01 90.4% 64.0%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.55 40.0 3.80e-01 75.7% 78.1%
3uitA02 1.20.1270.460 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 39.0 3.80e-01 91.3% 67.7%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.53 42.0 4.40e-01 85.2% 96.2%
2c12A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 39.0 3.79e-01 77.4% 96.9%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 39.0 3.58e-01 80.0% 84.3%
1bucA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 37.0 3.67e-01 74.8% 97.6%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.29e-01 77.4% 70.4%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 35.0 3.66e-01 71.3% 91.5%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.59e-01 79.1% 91.5%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.51 28.0 3.18e-01 93.0% 72.8%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 38.0 3.52e-01 81.7% 87.3%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.50 35.0 3.14e-01 72.2% 79.9%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 36.0 3.53e-01 76.5% 75.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006321 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.90 79.0 5.48e-01 93.0% 31.9%
5008406 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.87 72.0 7.69e-01 88.7% 100.0%
5026084 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 5.85e-01 88.7% 100.0%
5035003 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.68 56.0 5.87e-01 93.0% 97.1%
4943072 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.66 55.0 5.66e-01 89.6% 100.0%
4034131 101.1.1.248 alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.66 55.0 5.75e-01 91.3% 98.1%
3348349 106.1.1.3 alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin 0.58 45.0 4.14e-01 90.4% 61.9%
4949399 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.56 43.0 3.98e-01 80.0% 73.8%
4023387 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.56 40.0 4.26e-01 90.4% 84.0%
3373039 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.55 38.0 3.87e-01 73.9% 70.4%
3732706 3277.2.1.1 alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.51 37.0 3.94e-01 77.4% 92.0%
5076692 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.50 38.0 3.21e-01 80.9% 89.3%