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IMGVR_UViG_2799112912_000002-2799112912-2800879295

Arc-Vir

IMGVR_UViG_2799112912_000002-2799112912-2800879295

Identity

Kingdom:
archaea

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-28
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.76 56.0 3.80e-01 100.0% 21.0%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.70 55.0 4.33e-01 100.0% 40.6%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 49.0 2.92e-01 100.0% 21.2%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 52.0 3.76e-01 100.0% 58.8%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 48.0 3.10e-01 100.0% 14.7%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.67 54.0 3.00e-01 100.0% 6.5%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 50.0 3.03e-01 100.0% 12.0%
2n1hA00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.66 46.0 3.42e-01 85.7% 58.5%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.66 47.0 3.62e-01 100.0% 31.7%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 50.0 3.70e-01 100.0% 28.9%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.65 47.0 3.45e-01 100.0% 29.1%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 47.0 3.81e-01 100.0% 98.6%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.64 46.0 2.75e-01 82.1% 69.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 3.78e-01 100.0% 45.1%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.64 47.0 3.72e-01 100.0% 42.7%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 3.44e-01 100.0% 66.3%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 3.16e-01 100.0% 30.3%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 48.0 3.18e-01 100.0% 21.1%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 45.0 2.83e-01 100.0% 39.3%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.61 47.0 3.81e-01 100.0% 47.8%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 46.0 3.22e-01 100.0% 24.0%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.28e-01 100.0% 30.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.31e-01 100.0% 30.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 3.20e-01 100.0% 29.2%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.59 41.0 3.12e-01 96.4% 27.3%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.59 43.0 3.88e-01 100.0% 57.4%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 3.38e-01 100.0% 24.0%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.33e-01 100.0% 24.3%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 2.93e-01 78.6% 28.3%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 45.0 4.20e-01 96.4% 64.1%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 39.0 3.56e-01 100.0% 56.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 41.0 2.92e-01 100.0% 23.3%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 3.35e-01 100.0% 65.7%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 38.0 2.57e-01 92.9% 17.5%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.56 40.0 2.78e-01 96.4% 22.7%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 40.0 3.55e-01 92.9% 47.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.31e-01 100.0% 45.9%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.27e-01 100.0% 63.6%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 38.0 3.11e-01 96.4% 77.9%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.53 35.0 2.62e-01 96.4% 21.2%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 37.0 3.59e-01 100.0% 68.2%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 36.0 2.41e-01 100.0% 16.9%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.34e-01 96.4% 10.3%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008603 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.77 61.0 3.75e-01 100.0% 16.8%
4941644 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.76 62.0 3.68e-01 100.0% 12.4%
3351249 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.74 56.0 3.82e-01 100.0% 27.2%
3400449 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 54.0 3.42e-01 100.0% 14.9%
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.73 58.0 4.21e-01 100.0% 33.3%
3571503 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.71 56.0 4.72e-01 100.0% 50.9%
5068097 2484.1.1.71 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.70 51.0 2.86e-01 96.4% 5.8%
4864637 7008.1.1.1 alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.70 54.0 3.61e-01 100.0% 20.7%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 56.0 3.80e-01 100.0% 25.4%
3645540 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.69 54.0 3.23e-01 100.0% 11.6%
None 0.69 54.0 3.21e-01 100.0% 15.3%
3482645 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.69 54.0 5.18e-01 100.0% 77.1%
None 0.68 53.0 3.14e-01 100.0% 14.2%
5022933 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.68 53.0 4.52e-01 100.0% 52.7%
3777109 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.68 50.0 2.84e-01 100.0% 7.3%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.68 54.0 4.85e-01 100.0% 61.4%
3926267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 52.0 3.33e-01 100.0% 18.8%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.67 52.0 4.85e-01 100.0% 66.7%
3253903 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.67 48.0 2.97e-01 92.9% 13.6%
3485317 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 52.0 2.82e-01 100.0% 4.7%
3495969 919.1.1.0 few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 0.67 53.0 4.84e-01 100.0% 62.8%
3480502 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 51.0 2.81e-01 100.0% 4.7%
3606615 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.66 51.0 3.73e-01 96.4% 67.8%
4438701 375.1.1.272 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 0.66 52.0 4.51e-01 96.4% 53.1%
3576957 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.66 48.0 3.26e-01 100.0% 21.4%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.65 48.0 4.14e-01 100.0% 47.3%
3656431 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.65 50.0 2.83e-01 96.4% 13.0%
3322461 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.65 49.0 4.21e-01 100.0% 46.7%
3587082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 47.0 4.15e-01 96.4% 57.4%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.19e-01 100.0% 52.0%
3370663 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.65 48.0 4.09e-01 100.0% 49.2%
4517523 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 48.0 3.49e-01 100.0% 26.0%
3396193 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 49.0 3.30e-01 100.0% 23.1%
4932308 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.64 46.0 4.53e-01 96.4% 71.4%
4868887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.51e-01 96.4% 94.1%
5058552 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.63 46.0 4.17e-01 100.0% 54.0%
4998404 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 3.97e-01 100.0% 50.0%
4011287 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 49.0 3.95e-01 100.0% 44.3%
3280385 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 49.0 4.21e-01 100.0% 54.5%
5004521 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.62 47.0 3.95e-01 100.0% 46.7%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.62 46.0 3.59e-01 75.0% 55.7%
5061180 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.62 45.0 3.36e-01 100.0% 27.4%
4220398 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.61 45.0 2.96e-01 100.0% 16.5%
4153913 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 3.48e-01 100.0% 30.6%
4932987 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 45.0 4.41e-01 92.9% 80.0%
4887360 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 48.0 4.06e-01 100.0% 46.7%
3919221 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.61 43.0 3.52e-01 100.0% 34.7%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.60 44.0 2.48e-01 100.0% 5.7%
4669381 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 44.0 3.19e-01 96.4% 26.0%
5037801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.50e-01 100.0% 33.7%
3404925 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 46.0 4.09e-01 100.0% 60.0%
4995755 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.25e-01 100.0% 68.9%
5036656 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 3.91e-01 100.0% 51.7%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 3.86e-01 100.0% 52.0%
4832245 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 42.0 4.27e-01 100.0% 90.3%
3196528 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 43.0 3.76e-01 100.0% 50.0%
3177133 193.1.1.1 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.59 49.0 3.18e-01 100.0% 19.4%
4463837 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 40.0 3.03e-01 100.0% 24.8%
3260369 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 47.0 4.27e-01 100.0% 66.7%
3520811 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.59 47.0 3.71e-01 96.4% 41.4%
5030311 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 47.0 3.95e-01 100.0% 60.0%
3898522 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 3.79e-01 96.4% 58.0%
3882464 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 3.41e-01 100.0% 40.0%
4962895 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 3.70e-01 96.4% 52.7%
3789010 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.58 42.0 3.11e-01 100.0% 24.8%
4986717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 3.56e-01 100.0% 86.2%
3374952 375.4.1.5 few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.57 45.0 3.29e-01 89.3% 31.8%
4933707 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.57 45.0 2.88e-01 100.0% 16.2%
3561230 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 42.0 3.33e-01 96.4% 42.7%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 40.0 3.61e-01 100.0% 47.3%
4168653 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.56 43.0 3.83e-01 96.4% 58.0%
5075568 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 40.0 2.32e-01 82.1% 31.3%
2388493 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.55 41.0 3.47e-01 100.0% 46.9%
3247046 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.55 38.0 3.82e-01 100.0% 70.0%
4961948 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 47.0 3.17e-01 96.4% 25.0%
5030263 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.54 37.0 3.63e-01 100.0% 68.9%