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IMGVR_UViG_2799112916_000001-2799112916-2800886983

Arc-Vir

IMGVR_UViG_2799112916_000001-2799112916-2800886983

Identity

Kingdom:
archaea

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 242-435
PDB
Domain cluster: rep: MK455769.1__QBJ01055.1__X__00028__D32-247
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23844.2 best NCTSP_N 66.2 3.20e-18 99.5% 89.5%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.69 38.0 4.73e-01 99.5% 87.2%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 41.0 5.11e-01 95.9% 99.2%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 30.0 4.46e-01 94.8% 100.0%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 32.0 4.11e-01 92.8% 81.5%
3rnsA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 31.0 4.18e-01 92.3% 88.0%
4nzfD02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 30.0 4.33e-01 97.4% 96.7%
2q1zB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 29.0 3.98e-01 83.5% 89.2%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 31.0 4.29e-01 96.9% 97.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 30.0 3.86e-01 92.3% 80.7%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.61 32.0 4.17e-01 100.0% 91.4%
6ibkA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 31.0 4.17e-01 97.4% 96.9%
2dh2A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 30.0 4.10e-01 96.9% 98.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 32.0 4.11e-01 96.9% 95.2%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 4.97e-01 100.0% 95.1%
2opkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 29.0 3.96e-01 85.1% 100.0%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 4.62e-01 100.0% 92.4%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 51.0 4.46e-01 100.0% 89.7%
7b0xI01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.55 37.0 4.38e-01 100.0% 100.0%
2ya0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 30.0 3.95e-01 96.4% 99.0%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 26.0 3.70e-01 93.3% 97.8%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.84e-01 96.9% 76.0%
1g0dA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 27.0 3.52e-01 100.0% 88.7%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.54 29.0 3.60e-01 97.9% 85.7%
2zahA02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 33.0 3.99e-01 100.0% 92.2%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 50.0 4.98e-01 100.0% 97.0%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 4.81e-01 100.0% 97.2%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 4.45e-01 100.0% 86.8%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 4.47e-01 100.0% 96.9%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 29.0 3.58e-01 100.0% 87.5%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 30.0 3.80e-01 77.8% 99.1%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 25.0 3.42e-01 80.9% 92.6%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 3.56e-01 99.0% 92.7%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.51 27.0 3.29e-01 83.0% 77.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2409668 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 49.0 5.29e-01 100.0% 89.6%
3794468 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.65 36.0 4.64e-01 100.0% 94.5%
3412809 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 39.0 4.77e-01 97.9% 93.6%
5041542 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 40.0 4.97e-01 100.0% 100.0%
3908242 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 38.0 4.62e-01 97.4% 91.2%
3780422 10.1.1.88 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GBD_ELAPOR1 0.63 51.0 5.26e-01 100.0% 90.6%
4941514 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.62 31.0 4.30e-01 93.8% 97.9%
3212903 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 3.51e-01 100.0% 47.2%
4639307 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 49.0 5.12e-01 100.0% 90.6%
5033249 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 40.0 4.78e-01 98.5% 99.2%
4551881 10.2.1.39 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C 0.61 38.0 4.10e-01 100.0% 72.7%
5033861 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.60 40.0 4.78e-01 97.9% 99.2%
3532721 11.1.5.95 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd 0.60 39.0 4.35e-01 99.5% 82.7%
3404052 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 41.0 4.72e-01 100.0% 95.0%
4296109 10.2.1.39 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monoox_C 0.58 40.0 3.73e-01 100.0% 55.8%
3721048 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 30.0 3.73e-01 100.0% 80.8%
3917355 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 26.0 3.49e-01 86.1% 80.0%
4026940 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 41.0 4.43e-01 98.5% 88.5%
3480337 12.1.1.32 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_2_C 0.56 31.0 3.82e-01 77.8% 86.4%
2127699 10.42.1.0 ↗ beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain 0.55 33.0 4.03e-01 100.0% 92.1%
3864149 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.54 29.0 3.38e-01 100.0% 70.7%
4265804 11.1.5.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.54 40.0 4.28e-01 100.0% 88.5%
3889464 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 38.0 4.26e-01 100.0% 94.0%
4331518 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.53 27.0 3.43e-01 99.5% 82.7%
3297865 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 30.0 3.64e-01 86.1% 86.4%
3832080 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 37.0 2.65e-01 89.7% 24.2%
3472554 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.51 38.0 4.13e-01 100.0% 92.7%
D2 medium residues 11-169
PDB
D3 medium residues 445-490_524-557_580-620_692-705_767-826
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF23845.2 best TIM-barrel_NCTSP 41.4 1.40e-10 32.3% 12.9%
PF23845.2 TIM-barrel_NCTSP 31.1 1.90e-07 28.2% 12.4%
PF23845.2 TIM-barrel_NCTSP 27.8 1.80e-06 25.6% 11.5%
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pzgA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.79 73.0 5.81e-01 96.4% 99.2%
1gzjA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.74 66.0 5.62e-01 94.9% 99.3%
3qxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.74 66.0 5.64e-01 94.4% 99.3%
3emzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.72 65.0 5.39e-01 96.4% 99.1%
2hisA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.72 65.0 5.51e-01 96.9% 99.0%
3l5lA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 66.0 5.34e-01 99.0% 99.2%
1a0cA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.71 64.0 4.90e-01 96.4% 81.5%
3niyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.71 65.0 5.44e-01 97.9% 97.9%
2q02A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.70 62.0 5.55e-01 94.9% 98.5%
4k3zA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.68 61.0 5.21e-01 96.4% 97.7%
2vyoA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.68 59.0 5.81e-01 94.9% 87.4%
1a3wA02 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.67 59.0 5.57e-01 94.4% 99.6%
2zdsB00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.67 59.0 4.95e-01 94.4% 97.5%
2qw5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.66 58.0 4.91e-01 94.9% 97.9%
2bb0A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 58.0 5.01e-01 94.4% 92.6%
2ebnA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 59.0 5.21e-01 97.9% 96.1%
2hzgA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 57.0 5.25e-01 94.4% 87.5%
2pmqA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 56.0 5.30e-01 93.8% 92.7%
2chrA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 54.0 5.34e-01 88.7% 98.5%
1gg4A01 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.64 37.0 4.32e-01 86.7% 80.1%
1geqB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 56.0 5.19e-01 94.9% 98.4%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 55.0 4.75e-01 94.4% 88.7%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 55.0 5.40e-01 92.8% 93.2%
4ff5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 54.0 5.18e-01 92.8% 87.7%
6fv3C01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 57.0 4.84e-01 99.0% 100.0%
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 56.0 5.37e-01 96.9% 96.9%
5e97A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 51.0 4.68e-01 87.7% 97.6%
1zl0B02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.62 40.0 4.59e-01 84.1% 89.2%
1kcxA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 56.0 4.51e-01 98.5% 100.0%
3ndoA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 56.0 5.37e-01 97.4% 98.7%
5xd7A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 54.0 5.07e-01 92.8% 87.1%
3oa3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 56.0 5.08e-01 96.9% 86.6%
4r9xA00 3.20.20.380 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain 0.61 54.0 5.16e-01 93.8% 99.1%
3msyA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 54.0 5.08e-01 95.4% 87.3%
1gkpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 55.0 4.53e-01 98.5% 100.0%
3nl6B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 54.0 5.19e-01 94.9% 96.9%
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 55.0 4.68e-01 97.9% 88.5%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 54.0 4.73e-01 96.4% 94.5%
2fiqA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 54.0 4.77e-01 97.4% 96.5%
1knwA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.60 52.0 4.80e-01 91.8% 98.4%
3gjzA02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.59 40.0 4.23e-01 91.8% 76.3%
3ugvA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.59 53.0 4.94e-01 94.9% 91.1%
6xigA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 48.0 4.14e-01 85.6% 72.9%
1xi3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 53.0 5.23e-01 94.4% 94.1%
3up8A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.58 52.0 4.60e-01 96.4% 74.4%
2nw0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 49.0 4.99e-01 91.8% 91.5%
3b0pA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 50.0 4.73e-01 93.8% 97.4%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 48.0 4.61e-01 88.7% 100.0%
1h65B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 4.12e-01 82.6% 80.5%
1uf3A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 50.0 4.79e-01 95.4% 96.5%
1vjtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 34.0 4.29e-01 94.4% 100.0%
1zunB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 4.52e-01 83.1% 94.9%
2egvA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 44.0 4.74e-01 94.4% 100.0%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 43.0 4.28e-01 84.1% 97.6%
3rptA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.53 46.0 4.25e-01 94.9% 100.0%
3tzqB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 42.0 3.89e-01 83.6% 92.5%
1tq8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 33.0 3.93e-01 91.8% 96.1%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 4.30e-01 83.1% 100.0%
1qfjA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 35.0 4.06e-01 91.3% 98.5%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 41.0 3.54e-01 83.1% 69.5%
7jpjB01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 45.0 4.23e-01 96.4% 84.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3780835 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.81 75.0 5.45e-01 97.4% 69.6%
3282046 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.75 68.0 5.53e-01 94.9% 99.4%
364387 2002.1.1.8 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.73 65.0 5.53e-01 94.9% 87.0%
4012939 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.71 64.0 4.90e-01 96.9% 87.4%
5037633 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.70 62.0 5.47e-01 94.4% 99.3%
170194 2487.1.1.18 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C 0.68 40.0 4.92e-01 91.3% 91.0%
4959165 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.67 60.0 4.97e-01 94.4% 98.2%
4870345 2002.1.1.76 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.67 53.0 4.54e-01 83.6% 96.5%
3626021 2002.1.1.189 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM 0.66 59.0 5.03e-01 95.4% 90.8%
358286 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.64 57.0 5.20e-01 94.4% 87.0%
4447440 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.64 57.0 5.13e-01 93.8% 84.2%
4954274 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.64 58.0 5.30e-01 96.4% 93.6%
4344398 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.64 56.0 5.22e-01 93.8% 89.4%
3586869 2002.1.1.191 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MupG_N 0.64 57.0 5.27e-01 94.9% 97.6%
4004873 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.64 37.0 4.27e-01 86.7% 77.9%
3941774 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.64 56.0 4.79e-01 93.3% 72.0%
3971565 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 56.0 5.10e-01 93.8% 85.9%
4973360 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.63 57.0 5.08e-01 96.4% 94.5%
382325 2002.1.1.66 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.62 56.0 5.02e-01 94.4% 88.4%
5071929 2002.1.1.142 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTTB 0.62 56.0 4.20e-01 97.4% 78.5%
1066802 2002.1.1.55 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 0.62 54.0 5.18e-01 92.8% 87.7%
3786213 2003.1.1.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3Beta_HSD 0.62 44.0 3.59e-01 71.8% 98.9%
4273161 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.61 54.0 5.07e-01 94.4% 86.3%
4929335 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.61 53.0 4.31e-01 94.4% 77.3%
4300311 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.60 54.0 5.20e-01 93.8% 94.9%
4196685 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.60 53.0 5.01e-01 93.8% 86.3%
4246433 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.60 54.0 5.23e-01 94.9% 94.9%
4229449 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.60 53.0 5.15e-01 94.4% 92.7%
4580734 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.60 53.0 5.02e-01 93.3% 93.8%
4533580 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.59 53.0 5.05e-01 94.4% 89.2%
4585134 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.59 53.0 5.14e-01 94.4% 94.4%
3658577 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 55.0 5.12e-01 98.5% 88.5%
4088036 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.59 52.0 5.05e-01 94.4% 92.3%
3379064 2002.1.1.97 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI 0.59 54.0 5.13e-01 98.5% 92.2%
3855778 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.58 36.0 4.15e-01 84.1% 83.4%
3535233 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.58 36.0 4.43e-01 83.6% 96.8%
5026141 2487.1.1.18 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C 0.57 39.0 4.31e-01 92.8% 85.6%
3786130 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.57 38.0 4.44e-01 91.3% 96.3%
3454205 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 41.0 3.21e-01 85.6% 34.1%
5083481 2002.1.1.161 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_97 0.57 45.0 4.39e-01 84.1% 97.7%
5039083 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 35.0 4.29e-01 91.8% 96.0%
4935823 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 47.0 3.91e-01 87.2% 80.3%
5032582 2002.1.2.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 0.56 45.0 4.77e-01 83.1% 94.2%
4962915 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 34.0 4.22e-01 76.9% 97.5%
3193547 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.55 48.0 4.36e-01 93.3% 82.2%
3428207 207.1.1.172 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD, LRR_At5g56370 0.54 38.0 3.10e-01 88.7% 38.3%
3271471 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 38.0 4.27e-01 77.4% 93.3%
4157810 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 34.0 4.16e-01 86.7% 99.2%
4935176 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 47.0 3.87e-01 95.4% 80.3%
5066233 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.53 43.0 3.87e-01 87.2% 85.0%
4989511 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 46.0 3.85e-01 93.3% 90.0%
3760002 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.53 38.0 4.11e-01 79.5% 86.7%
5062673 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 31.0 4.00e-01 86.7% 100.0%
3175335 7514.1.1.3 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.52 42.0 4.44e-01 91.3% 95.9%
5027428 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.52 37.0 3.78e-01 91.8% 74.2%
3673272 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 42.0 3.35e-01 86.2% 98.6%
3254453 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.52 42.0 3.75e-01 83.6% 95.1%
3349539 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 43.0 3.44e-01 87.2% 77.0%
3418569 7573.1.1.2 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.51 40.0 4.34e-01 82.1% 97.0%
3970285 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 41.0 4.21e-01 84.1% 93.2%
4013259 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.51 40.0 3.15e-01 83.1% 84.2%
D4 medium residues 508-523_558-579_621-660
PDB
Domain cluster: rep: OK041469.1__UDY80366.1__AXY1_55__00055__D164-179_223-275
D5 medium residues 706-766
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zkdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 54.0 3.65e-01 100.0% 31.3%
3lkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 52.0 3.41e-01 98.4% 30.5%
2o3jB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 48.0 3.37e-01 91.8% 96.2%
3b4uA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 50.0 3.24e-01 96.7% 22.3%
3mt0A00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 47.0 3.12e-01 95.1% 24.2%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 44.0 2.87e-01 88.5% 17.3%
1r6uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 47.0 3.27e-01 100.0% 28.3%
3proC02 3.30.300.50 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.58 40.0 3.89e-01 73.8% 78.6%
4gywA05 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 42.0 3.25e-01 96.7% 32.3%
3a04A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 46.0 3.20e-01 100.0% 27.9%
6izhE00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.56 45.0 3.73e-01 95.1% 66.9%
5wtpA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.56 46.0 3.84e-01 100.0% 58.9%
2o20A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 3.55e-01 100.0% 40.9%
3cypB00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.56 47.0 3.79e-01 98.4% 58.9%
1q0uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.30e-01 98.4% 50.5%
3vpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 46.0 3.64e-01 96.7% 58.9%
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.54 44.0 3.40e-01 100.0% 51.8%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.94e-01 98.4% 28.7%
3focA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 43.0 2.84e-01 100.0% 19.9%
1bdgA01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.53 42.0 2.87e-01 96.7% 75.6%
3bblA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 3.17e-01 100.0% 39.2%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 3.42e-01 96.7% 50.4%
4lhpF00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.50 41.0 3.40e-01 100.0% 60.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029904 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 60.0 4.56e-01 100.0% 43.3%
5046011 7581.1.1.15 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C_1 0.61 52.0 3.19e-01 96.7% 17.3%
4979211 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.60 52.0 3.77e-01 100.0% 34.4%
4946557 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.59 49.0 3.57e-01 96.7% 57.8%
4579452 2005.2.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 0.58 49.0 3.43e-01 96.7% 28.6%
5037151 7543.1.1.2 ↗ a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.58 44.0 3.61e-01 88.5% 42.4%
3971387 2005.2.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 0.58 48.0 3.41e-01 96.7% 29.3%
4206850 2007.1.2.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 0.57 46.0 3.46e-01 100.0% 35.0%
5005020 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 46.0 3.67e-01 96.7% 48.6%
1824348 7512.1.1.33 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 0.56 42.0 3.01e-01 96.7% 24.4%
4989787 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.47e-01 96.7% 35.3%
3273838 2006.1.1.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like 0.54 45.0 3.63e-01 100.0% 51.9%
5079189 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.54 44.0 3.55e-01 100.0% 61.5%
3742297 4320.1.1.1 ↗ alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.54 45.0 3.32e-01 98.4% 51.1%
5054154 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 40.0 3.50e-01 82.0% 52.0%
4258494 2007.1.2.10 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 0.53 41.0 3.21e-01 100.0% 36.1%
4965860 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 39.0 3.29e-01 86.9% 67.0%
4025850 2006.1.1.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like 0.51 42.0 3.28e-01 100.0% 46.5%
3590886 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.50 40.0 2.28e-01 95.1% 11.0%