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IMGVR_UViG_2799112916_000001-2799112916-2800887008

Arc-Vir

IMGVR_UViG_2799112916_000001-2799112916-2800887008

Identity

Kingdom:
archaea

Quality

75.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-56
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.76 47.0 5.28e-01 72.3% 88.2%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 43.0 3.56e-01 85.1% 35.9%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.64 50.0 3.28e-01 85.1% 82.5%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 45.0 4.30e-01 74.5% 76.4%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.64 43.0 3.96e-01 70.2% 58.1%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 49.0 3.81e-01 87.2% 59.3%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 42.0 3.94e-01 70.2% 62.3%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 44.0 3.91e-01 78.7% 64.4%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 43.0 3.85e-01 76.6% 51.4%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.26e-01 85.1% 45.4%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 44.0 2.76e-01 83.0% 70.3%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 2.97e-01 76.6% 23.6%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.87e-01 87.2% 20.5%
2cnxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 44.0 2.77e-01 85.1% 23.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 43.0 4.20e-01 80.9% 78.8%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 42.0 3.90e-01 78.7% 75.8%
2m6nA00 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 44.0 4.47e-01 93.6% 97.8%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 33.0 3.62e-01 70.2% 78.8%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.39e-01 85.1% 34.0%
2poiA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.54 39.0 3.37e-01 78.7% 53.8%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.54 42.0 3.47e-01 95.7% 48.0%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.54 38.0 3.11e-01 80.9% 44.3%
1iq8A03 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.53 37.0 3.41e-01 80.9% 73.0%
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.53 39.0 3.12e-01 80.9% 39.8%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.04e-01 93.6% 84.1%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 40.0 3.20e-01 97.9% 50.0%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.52 37.0 2.57e-01 78.7% 71.2%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.52 40.0 3.21e-01 93.6% 70.8%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.33e-01 78.7% 76.1%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.50 38.0 3.12e-01 83.0% 44.1%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222865 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.87 60.0 6.48e-01 72.3% 85.0%
4996201 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.86 65.0 6.66e-01 80.9% 95.6%
3758626 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.85 60.0 5.34e-01 74.5% 53.8%
4263170 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.85 59.0 5.07e-01 72.3% 48.6%
4966301 375.1.1.320 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB 0.83 56.0 6.41e-01 70.2% 94.3%
4061049 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.83 57.0 6.17e-01 72.3% 85.0%
5023273 4294.1.1.12 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_Ribbon_TF 0.83 58.0 5.74e-01 74.5% 70.0%
5046920 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.82 57.0 5.82e-01 72.3% 75.6%
4944100 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 58.0 6.20e-01 74.5% 87.5%
3808970 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 56.0 5.56e-01 72.3% 68.0%
4053431 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.81 61.0 5.76e-01 80.9% 80.0%
5025138 101.1.10.80 alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.81 57.0 3.68e-01 74.5% 17.5%
4287145 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.80 57.0 5.22e-01 74.5% 58.3%
3613928 375.1.1.137 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB_Zn-ribbon_Tryp 0.79 58.0 5.94e-01 78.7% 86.7%
3564885 375.1.1.44 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.76 47.0 5.42e-01 70.2% 96.7%
1879331 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.76 53.0 5.51e-01 72.3% 83.7%
3330763 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.75 50.0 5.35e-01 70.2% 82.5%
4477670 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.74 53.0 3.33e-01 76.6% 17.5%
4437923 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 50.0 3.17e-01 72.3% 15.9%
5018525 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 48.0 5.09e-01 70.2% 80.0%
3292956 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.73 51.0 5.04e-01 74.5% 72.0%
4379683 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.73 49.0 3.14e-01 76.6% 15.0%
3948249 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 54.0 3.38e-01 80.9% 17.3%
None 0.73 54.0 3.39e-01 80.9% 17.6%
3261011 375.1.1.85 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.73 54.0 5.39e-01 83.0% 84.0%
4367584 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 52.0 3.01e-01 78.7% 9.5%
4178833 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.72 48.0 3.28e-01 72.3% 19.4%
4056467 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 52.0 4.86e-01 78.7% 70.0%
2127008 2004.1.1.219 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.72 53.0 4.03e-01 80.9% 37.7%
3385436 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 53.0 3.38e-01 80.9% 17.9%
3980811 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.72 50.0 4.72e-01 76.6% 70.0%
4263366 2004.1.1.219 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.71 52.0 3.30e-01 80.9% 18.0%
4929508 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 45.0 3.35e-01 74.5% 24.8%
3974544 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 4.75e-01 76.6% 74.5%
3506351 375.1.1.44 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.68 46.0 4.95e-01 72.3% 94.3%
4397965 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 46.0 3.34e-01 74.5% 24.3%
4026760 375.1.1.85 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.68 47.0 4.85e-01 76.6% 86.7%
4227538 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.68 47.0 4.50e-01 74.5% 72.7%
5062906 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 46.0 4.26e-01 72.3% 55.0%
3992738 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 46.0 4.70e-01 72.3% 75.6%
3271611 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.67 51.0 4.93e-01 85.1% 100.0%
3514931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 45.0 4.75e-01 74.5% 82.5%
5067465 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 44.0 4.30e-01 72.3% 61.8%
4026585 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 46.0 2.99e-01 76.6% 30.2%
3262703 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 45.0 4.52e-01 76.6% 80.0%
1210727 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.64 43.0 3.57e-01 70.2% 41.9%
4011521 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 42.0 3.70e-01 70.2% 49.3%
4991697 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 46.0 3.52e-01 80.9% 42.1%
3800967 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.62 41.0 3.65e-01 83.0% 45.7%
3808136 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.62 41.0 3.42e-01 70.2% 44.4%
3503411 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 37.0 3.81e-01 72.3% 60.0%
3537747 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.61 40.0 3.82e-01 76.6% 56.4%
5000639 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 3.32e-01 80.9% 36.7%
3317170 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 37.0 3.79e-01 72.3% 62.2%
3537939 386.1.1.316 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30902 0.59 40.0 4.06e-01 78.7% 73.3%
3397452 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 35.0 3.34e-01 74.5% 46.7%
1758949 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.58 44.0 3.29e-01 89.4% 91.2%
3788745 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.09e-01 83.0% 28.3%
4995759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 3.77e-01 87.2% 51.2%
4018431 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.57 42.0 4.06e-01 83.0% 81.8%
3955489 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.56 38.0 2.58e-01 72.3% 19.0%
3882068 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 35.0 3.47e-01 74.5% 58.0%
3412674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 3.55e-01 87.2% 57.8%
3833354 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.56 38.0 3.69e-01 72.3% 72.7%
3293816 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.56 42.0 3.46e-01 83.0% 58.9%
3593533 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.30e-01 80.9% 54.0%
3935829 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 34.0 3.28e-01 74.5% 47.5%
4260807 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 3.75e-01 87.2% 65.7%
2721399 7592.1.1.8 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 0.53 38.0 2.68e-01 76.6% 74.5%
2410150 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.51 37.0 2.47e-01 80.9% 25.4%
3598119 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.51 31.0 2.79e-01 78.7% 38.6%