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IMGVR_UViG_2799112916_000001-2799112916-2800887013
Arc-VirIMGVR_UViG_2799112916_000001-2799112916-2800887013
Identity
- Kingdom:
- archaea
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t38A01 | 1.10.8.1060 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain | 0.75 | 64.0 | 5.92e-01 | 100.0% | 83.1% |
| 3b89A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 61.0 | 6.14e-01 | 100.0% | 90.7% |
| 3gcgB00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.74 | 63.0 | 4.61e-01 | 100.0% | 76.3% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.72 | 63.0 | 5.25e-01 | 100.0% | 94.6% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 43.0 | 4.34e-01 | 77.4% | 60.4% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.70 | 58.0 | 5.20e-01 | 100.0% | 65.8% |
| 2k7bA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.69 | 58.0 | 5.22e-01 | 96.2% | 67.1% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.69 | 45.0 | 4.37e-01 | 73.6% | 59.0% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 57.0 | 5.00e-01 | 100.0% | 63.6% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.67 | 49.0 | 4.80e-01 | 79.2% | 79.7% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.64 | 40.0 | 4.22e-01 | 100.0% | 71.7% |
| 2f33A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 51.0 | 4.48e-01 | 94.3% | 58.6% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.63 | 48.0 | 3.97e-01 | 84.9% | 93.8% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.61 | 48.0 | 4.24e-01 | 94.3% | 65.9% |
| 3l0oA01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.61 | 38.0 | 3.97e-01 | 100.0% | 67.3% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.61 | 51.0 | 4.97e-01 | 100.0% | 88.1% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 50.0 | 3.80e-01 | 94.3% | 60.6% |
| 1ekjA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.59 | 41.0 | 2.81e-01 | 73.6% | 18.6% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 45.0 | 3.99e-01 | 92.5% | 86.0% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 45.0 | 3.54e-01 | 88.7% | 65.0% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 47.0 | 3.29e-01 | 96.2% | 31.2% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.56 | 40.0 | 3.79e-01 | 73.6% | 69.4% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.55 | 40.0 | 3.47e-01 | 81.1% | 56.5% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.55 | 38.0 | 2.82e-01 | 71.7% | 42.1% |
| 2ifaB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.54 | 40.0 | 2.87e-01 | 88.7% | 47.3% |
| 2ocgA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 2.94e-01 | 100.0% | 87.4% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.53 | 43.0 | 3.85e-01 | 92.5% | 81.6% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 38.0 | 3.59e-01 | 79.2% | 80.0% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 39.0 | 3.00e-01 | 77.4% | 53.8% |
| 1qgiA01 | 3.30.386.10 | Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 | 0.51 | 41.0 | 3.16e-01 | 98.1% | 99.3% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 41.0 | 3.47e-01 | 100.0% | 51.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580179 | 103.11.1.1 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N | 0.80 | 70.0 | 6.42e-01 | 100.0% | 75.7% |
| 3412847 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 64.0 | 6.53e-01 | 100.0% | 98.0% |
| 3281755 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.77 | 67.0 | 6.48e-01 | 100.0% | 95.0% |
| 3780993 | 3443.1.1.5 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › TTC3_9th | 0.75 | 67.0 | 6.42e-01 | 100.0% | 88.3% |
| 4974219 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 61.0 | 3.88e-01 | 100.0% | 18.8% |
| 4148498 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.74 | 61.0 | 6.23e-01 | 98.1% | 100.0% |
| 3886972 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 59.0 | 5.60e-01 | 98.1% | 73.8% |
| 3610347 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.73 | 62.0 | 5.40e-01 | 100.0% | 62.4% |
| 3767057 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 59.0 | 5.30e-01 | 100.0% | 65.3% |
| 4053752 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.72 | 61.0 | 5.88e-01 | 100.0% | 85.0% |
| 3379763 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.71 | 52.0 | 4.53e-01 | 77.4% | 56.2% |
| 5016159 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.70 | 54.0 | 5.22e-01 | 86.8% | 75.0% |
| 3502321 | 103.1.1.86 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28543 | 0.66 | 55.0 | 5.16e-01 | 96.2% | 76.9% |
| 5030514 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.65 | 51.0 | 5.28e-01 | 96.2% | 98.0% |
| 5001110 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.62 | 51.0 | 3.44e-01 | 100.0% | 26.4% |
| 3453016 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.61 | 43.0 | 4.07e-01 | 75.5% | 61.5% |
| 3534671 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 48.0 | 4.01e-01 | 88.7% | 55.8% |
| 3589151 | 829.1.1.2 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6 | 0.60 | 48.0 | 3.81e-01 | 94.3% | 52.0% |
| 2772442 | 159.1.2.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dATP-dGTP_PPHyd | 0.57 | 42.0 | 3.46e-01 | 81.1% | 51.5% |
| 3607327 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 3.61e-01 | 88.7% | 61.7% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 44.0 | 4.20e-01 | 94.3% | 76.9% |
| 5060252 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.53 | 46.0 | 4.00e-01 | 100.0% | 76.5% |
| 5020814 | 3290.1.1.0 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B | 0.52 | 43.0 | 3.69e-01 | 94.3% | 76.7% |
| 5060253 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.51 | 43.0 | 4.05e-01 | 94.3% | 78.5% |
| 136703 | 3808.1.1.1 ↗ | alpha arrays › Archaeal protein SSO6904 › Archaeal protein SSO6904 › Archaeal protein SSO6904 › Ca_bind_SSO6904 | 0.50 | 41.0 | 3.47e-01 | 100.0% | 51.5% |