Back to structures

IMGVR_UViG_2799112916_000001-2799112916-2800887017

Arc-Vir

IMGVR_UViG_2799112916_000001-2799112916-2800887017

Identity

Kingdom:
archaea

Quality

63.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 103-168
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11753.14 best DUF3310 39.3 7.80e-10 77.3% 71.7%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.81 62.0 6.11e-01 81.8% 83.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 60.0 6.34e-01 78.8% 94.8%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 60.0 5.73e-01 80.3% 75.0%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 69.0 6.02e-01 95.5% 81.6%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 63.0 6.02e-01 86.4% 80.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.78 61.0 6.36e-01 83.3% 95.1%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 67.0 5.90e-01 95.5% 69.1%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 65.0 4.98e-01 93.9% 86.7%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 65.0 6.26e-01 92.4% 87.8%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 60.0 4.34e-01 84.8% 32.4%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 60.0 5.50e-01 84.8% 69.8%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 60.0 6.23e-01 84.8% 95.2%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 63.0 4.84e-01 92.4% 88.1%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 62.0 5.70e-01 89.4% 85.9%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 65.0 5.15e-01 95.5% 61.2%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.75 59.0 4.82e-01 84.8% 49.6%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 59.0 5.97e-01 84.8% 93.8%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.73 52.0 4.70e-01 75.8% 58.2%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 60.0 5.77e-01 92.4% 80.5%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.72 57.0 4.95e-01 84.8% 94.9%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 53.0 4.18e-01 78.8% 77.4%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.72 51.0 4.72e-01 81.8% 58.8%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 51.0 4.79e-01 75.8% 63.0%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.71 48.0 4.59e-01 75.8% 59.0%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 55.0 5.43e-01 84.8% 85.9%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 53.0 4.42e-01 81.8% 47.0%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 52.0 4.18e-01 78.8% 50.4%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.70 59.0 4.97e-01 97.0% 69.2%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 53.0 5.37e-01 84.8% 89.6%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.70 61.0 4.10e-01 97.0% 79.7%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.70 55.0 5.06e-01 86.4% 78.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.69 55.0 4.94e-01 84.8% 68.9%
1nw1A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.69 57.0 3.77e-01 90.9% 85.4%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.69 49.0 4.17e-01 90.9% 45.0%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 59.0 5.02e-01 97.0% 57.7%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 62.0 4.65e-01 100.0% 90.5%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.68 52.0 4.77e-01 84.8% 61.5%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 53.0 3.70e-01 84.8% 27.9%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.67 50.0 5.09e-01 80.3% 83.1%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.67 53.0 5.32e-01 84.8% 84.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.67 49.0 4.68e-01 80.3% 67.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.67 48.0 4.36e-01 77.3% 68.1%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 53.0 4.50e-01 93.9% 61.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.65 48.0 4.94e-01 87.9% 88.5%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 53.0 5.19e-01 95.5% 97.3%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 46.0 4.86e-01 77.3% 94.7%
4ir8A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 43.0 3.19e-01 74.2% 97.2%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 49.0 3.89e-01 93.9% 87.8%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.58 49.0 3.99e-01 93.9% 66.1%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.58 42.0 4.48e-01 80.3% 92.9%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 43.0 2.82e-01 83.3% 18.0%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.56 38.0 4.09e-01 78.8% 98.0%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 42.0 3.74e-01 86.4% 60.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969538 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 64.0 7.02e-01 75.8% 98.2%
5055477 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.86 67.0 6.27e-01 81.8% 72.5%
3936693 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.85 65.0 5.58e-01 80.3% 57.0%
3250543 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.85 66.0 5.42e-01 81.8% 49.1%
5030987 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 63.0 5.86e-01 78.8% 70.0%
3513582 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.82 62.0 5.10e-01 78.8% 72.7%
1566346 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 60.0 5.87e-01 78.8% 74.6%
2720300 192.22.1.1 alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › RLIP76_Ral-bd 0.80 58.0 6.48e-01 77.3% 98.0%
3593945 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 72.0 5.01e-01 100.0% 73.2%
3832084 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 60.0 5.77e-01 80.3% 77.3%
4202640 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.79 57.0 6.20e-01 84.8% 90.9%
5006970 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.78 61.0 4.77e-01 84.8% 45.7%
4936497 150.1.1.14 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.78 60.0 5.44e-01 81.8% 65.9%
5063166 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.77 61.0 5.21e-01 84.8% 56.2%
5048590 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.77 60.0 5.03e-01 83.3% 53.6%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.76 60.0 6.12e-01 84.8% 90.8%
3170797 605.4.1.4 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.75 59.0 4.83e-01 84.8% 49.2%
4004067 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 65.0 6.02e-01 97.0% 83.5%
4665988 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.75 59.0 5.04e-01 84.8% 53.3%
3588172 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.74 58.0 4.44e-01 84.8% 40.0%
3621106 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 55.0 3.77e-01 80.3% 23.9%
3201381 192.8.1.139 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Fung_rhodopsin 0.73 57.0 5.46e-01 83.3% 73.3%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 4.14e-01 84.8% 35.3%
4295915 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 56.0 4.39e-01 81.8% 42.3%
3720488 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.72 55.0 4.44e-01 83.3% 60.0%
3663674 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.71 62.0 4.69e-01 100.0% 75.2%
3195087 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.71 62.0 5.23e-01 97.0% 59.1%
3179301 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.70 58.0 3.46e-01 93.9% 27.1%
3276944 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.69 56.0 5.43e-01 92.4% 80.0%
5043119 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.69 56.0 5.56e-01 92.4% 95.7%
4024570 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.69 57.0 5.08e-01 92.4% 65.3%
3229095 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 54.0 4.69e-01 84.8% 59.0%
4953267 632.11.1.19 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF2096_N 0.68 48.0 4.21e-01 78.8% 49.0%
3725261 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.68 52.0 3.43e-01 84.8% 20.0%
3775580 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.67 49.0 4.77e-01 80.3% 73.3%
3704 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.66 50.0 4.93e-01 84.8% 83.3%
3259629 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 49.0 4.30e-01 80.3% 64.0%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.65 50.0 4.85e-01 84.8% 81.3%
3381499 314.1.1.1 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.63 46.0 2.85e-01 80.3% 12.6%
3608744 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.15e-01 98.5% 59.7%
3692194 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.56 45.0 4.36e-01 95.5% 85.0%