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IMGVR_UViG_2799112921_000001-2799112921-2800896416

Arc-Vir

IMGVR_UViG_2799112921_000001-2799112921-2800896416

Identity

Kingdom:
archaea

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-106
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.77 50.0 5.41e-01 70.6% 78.9%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.73 55.0 4.58e-01 80.0% 90.4%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.69 61.0 4.65e-01 95.3% 90.1%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 36.0 4.15e-01 96.5% 71.0%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.67 52.0 4.55e-01 84.7% 90.8%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.67 59.0 4.88e-01 100.0% 92.3%
4ae5C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 45.0 3.68e-01 70.6% 88.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.66 48.0 4.36e-01 75.3% 87.4%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 53.0 4.99e-01 91.8% 75.7%
3nytA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 56.0 5.05e-01 100.0% 90.4%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 45.0 3.67e-01 75.3% 71.3%
1r6vA02 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.62 44.0 4.58e-01 97.6% 80.8%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 44.0 4.79e-01 81.2% 92.9%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 49.0 3.92e-01 85.9% 93.5%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 50.0 4.27e-01 89.4% 58.9%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 50.0 4.17e-01 89.4% 58.5%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 49.0 4.91e-01 87.1% 88.2%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 47.0 4.22e-01 85.9% 97.5%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 50.0 4.66e-01 98.8% 72.8%
3dnpA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 47.0 4.22e-01 82.4% 93.8%
2w7vA00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.60 48.0 4.88e-01 89.4% 90.2%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 44.0 4.58e-01 87.1% 87.3%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 47.0 3.88e-01 89.4% 52.8%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 4.37e-01 81.2% 96.6%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.58 46.0 4.36e-01 85.9% 98.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.58 44.0 4.19e-01 82.4% 96.0%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 44.0 4.49e-01 89.4% 84.3%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.58 40.0 4.09e-01 74.1% 74.7%
1vkwA02 3.40.109.30 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 0.58 44.0 4.33e-01 84.7% 83.3%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 47.0 4.04e-01 90.6% 57.1%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 50.0 3.57e-01 100.0% 36.6%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 44.0 3.82e-01 83.5% 94.6%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 46.0 4.06e-01 89.4% 64.3%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 45.0 3.71e-01 88.2% 53.5%
4myjA05 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 4.28e-01 82.4% 80.7%
5klkB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 39.0 2.74e-01 71.8% 84.4%
5lohB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 4.27e-01 89.4% 87.8%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.55 44.0 3.77e-01 85.9% 64.4%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.55 42.0 4.15e-01 83.5% 91.5%
3nyqA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 39.0 3.91e-01 76.5% 93.0%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 39.0 3.86e-01 78.8% 90.6%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.54 42.0 4.07e-01 84.7% 95.8%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 40.0 3.94e-01 81.2% 73.4%
4i93A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 4.00e-01 83.5% 76.8%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 41.0 3.99e-01 87.1% 97.0%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.53 39.0 3.56e-01 90.6% 57.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 48.0 3.82e-01 100.0% 82.0%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 45.0 4.20e-01 98.8% 93.4%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.67e-01 77.6% 47.3%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.39e-01 91.8% 77.0%
2pcrA02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.50 41.0 3.73e-01 88.2% 80.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082092 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.73 47.0 3.41e-01 82.4% 25.0%
4017316 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.72 53.0 4.18e-01 77.6% 91.4%
3698115 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.72 54.0 4.31e-01 80.0% 95.3%
5022354 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.71 53.0 5.69e-01 88.2% 89.3%
5056573 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.71 46.0 3.36e-01 81.2% 25.3%
4122798 242.1.1.6 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.68 55.0 5.13e-01 85.9% 71.4%
5620 320.3.1.1 a+b two layers › R3H domain-like › PG1857-like › PG1857-like › DUF2023 0.66 48.0 4.37e-01 75.3% 87.4%
3206012 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 49.0 4.71e-01 89.4% 67.0%
3251998 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.65 50.0 4.69e-01 89.4% 66.7%
3537229 310.3.1.21 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB 0.63 50.0 4.69e-01 85.9% 94.3%
3602137 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 52.0 5.00e-01 88.2% 83.2%
4990495 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.63 46.0 5.15e-01 80.0% 100.0%
3921187 320.4.1.7 a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.62 48.0 3.59e-01 84.7% 38.6%
4946208 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 49.0 4.83e-01 87.1% 81.1%
3758608 320.4.1.7 a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.62 49.0 4.37e-01 85.9% 71.7%
3760913 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.61 46.0 4.12e-01 81.2% 77.6%
3639719 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.61 48.0 4.92e-01 84.7% 88.7%
3177415 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.61 50.0 4.57e-01 91.8% 68.2%
3604362 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 44.0 4.68e-01 91.8% 86.7%
3509429 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 43.0 3.80e-01 75.3% 76.2%
4377946 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.60 48.0 4.22e-01 88.2% 56.9%
4929591 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.60 46.0 4.58e-01 87.1% 79.8%
1388654 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.60 49.0 4.02e-01 90.6% 53.0%
5031484 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 46.0 4.59e-01 83.5% 81.1%
4971295 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 49.0 4.77e-01 90.6% 83.2%
4131749 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 47.0 4.41e-01 91.8% 68.2%
4395233 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 48.0 4.04e-01 89.4% 54.5%
3272247 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 48.0 4.11e-01 91.8% 54.5%
5008116 304.24.1.39 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 0.58 41.0 3.98e-01 97.6% 66.3%
4509301 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.58 48.0 3.93e-01 91.8% 52.5%
3966915 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 44.0 3.03e-01 83.5% 46.0%
4237486 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.58 47.0 3.86e-01 88.2% 49.0%
3176794 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.57 47.0 4.02e-01 90.6% 56.4%
3596328 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 49.0 4.01e-01 98.8% 87.6%
4587247 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 44.0 4.41e-01 87.1% 80.0%
4632598 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 45.0 4.05e-01 87.1% 72.5%
3444177 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 45.0 4.66e-01 100.0% 95.0%
4115001 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.56 46.0 4.04e-01 90.6% 62.3%
4536899 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.56 45.0 3.89e-01 91.8% 63.4%
2990398 1118.1.1.1 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 0.55 42.0 3.27e-01 80.0% 82.9%
3494198 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.55 44.0 3.34e-01 84.7% 48.4%
4962332 304.165.1.2 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › BAT 0.55 48.0 3.98e-01 98.8% 64.5%
4960640 304.165.1.4 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.54 45.0 3.88e-01 95.3% 87.6%
3990127 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 41.0 3.80e-01 82.4% 89.1%
3532818 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 35.0 3.63e-01 91.8% 70.0%
3383404 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.54 43.0 4.03e-01 87.1% 87.5%
4943463 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.54 47.0 4.46e-01 100.0% 82.0%
3443030 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 43.0 4.48e-01 100.0% 97.5%
3786773 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.52 43.0 3.86e-01 95.3% 93.8%
3274239 330.1.1.18 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 0.52 43.0 3.92e-01 100.0% 67.0%
3782338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 41.0 4.03e-01 100.0% 79.6%
3647962 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 44.0 3.80e-01 100.0% 77.2%
4797006 1.1.2.20 beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central 0.51 41.0 3.74e-01 89.4% 71.2%
4955390 304.24.1.39 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 0.51 45.0 3.92e-01 100.0% 63.8%
4858172 3517.1.1.2 a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Bunya_RdRp 0.51 46.0 3.27e-01 100.0% 57.5%
3941694 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.50 43.0 3.99e-01 98.8% 83.6%