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IMGVR_UViG_2802429591_000003-2802429591-2805863892
Arc-VirIMGVR_UViG_2802429591_000003-2802429591-2805863892
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-61
Domain cluster:
rep: IMGVR_UViG_2799112916_000001-2799112916-2800887008__D10-56
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08271.18 best | Zn_Ribbon_TF | 34.6 | 1.50e-08 | 60.7% | 65.1% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dl6A00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 46.0 | 4.65e-01 | 100.0% | 75.9% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.60 | 52.0 | 3.49e-01 | 92.9% | 30.1% |
| 1g8jB00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.59 | 45.0 | 3.62e-01 | 89.3% | 78.9% |
| 3zvqA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 35.0 | 3.29e-01 | 73.2% | 47.1% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 41.0 | 2.60e-01 | 78.6% | 26.3% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 38.0 | 3.62e-01 | 89.3% | 56.9% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.56 | 37.0 | 3.64e-01 | 87.5% | 62.9% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.54 | 39.0 | 2.76e-01 | 78.6% | 90.3% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 38.0 | 3.51e-01 | 82.1% | 56.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.46e-01 | 94.6% | 25.6% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.32e-01 | 96.4% | 69.6% |
| 3bfmA02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.51e-01 | 78.6% | 86.0% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.51 | 40.0 | 3.07e-01 | 85.7% | 73.6% |
| 2o0aA00 | 3.40.850.20 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › | 0.51 | 40.0 | 2.74e-01 | 96.4% | 50.2% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.51 | 44.0 | 3.60e-01 | 100.0% | 75.2% |
| 1twfB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.51 | 32.0 | 2.88e-01 | 76.8% | 41.2% |
| 6m90A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 35.0 | 2.35e-01 | 76.8% | 28.8% |
| 3g12B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 36.0 | 3.00e-01 | 80.4% | 80.5% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996201 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.86 | 54.0 | 5.98e-01 | 82.1% | 80.0% |
| 4943134 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 53.0 | 6.53e-01 | 82.1% | 100.0% |
| 3488426 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.85 | 53.0 | 5.90e-01 | 83.9% | 80.0% |
| 4125041 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.85 | 52.0 | 6.30e-01 | 80.4% | 100.0% |
| 4061049 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.83 | 55.0 | 6.42e-01 | 91.1% | 97.5% |
| 4405476 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.81 | 49.0 | 3.28e-01 | 83.9% | 17.5% |
| 5023273 | 4294.1.1.12 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_Ribbon_TF | 0.79 | 58.0 | 6.13e-01 | 96.4% | 86.0% |
| 4944100 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 52.0 | 6.01e-01 | 87.5% | 95.0% |
| 1879331 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.78 | 54.0 | 6.06e-01 | 92.9% | 95.3% |
| 4311400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 43.0 | 4.99e-01 | 80.4% | 77.5% |
| 5053416 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.77 | 52.0 | 5.70e-01 | 91.1% | 86.7% |
| 3222865 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.76 | 52.0 | 6.06e-01 | 92.9% | 100.0% |
| 3330763 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.76 | 49.0 | 5.61e-01 | 87.5% | 92.5% |
| 4053431 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.76 | 54.0 | 5.51e-01 | 92.9% | 76.4% |
| 5046920 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.75 | 53.0 | 5.83e-01 | 92.9% | 88.9% |
| 4263170 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.75 | 54.0 | 5.02e-01 | 92.9% | 60.0% |
| 4854353 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.74 | 52.0 | 5.38e-01 | 89.3% | 79.2% |
| 3613928 | 375.1.1.137 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB_Zn-ribbon_Tryp | 0.73 | 49.0 | 5.42e-01 | 87.5% | 88.9% |
| 4961653 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 43.0 | 5.01e-01 | 89.3% | 85.0% |
| 2734777 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.71 | 43.0 | 4.83e-01 | 80.4% | 82.9% |
| 4438701 | 375.1.1.272 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 | 0.70 | 45.0 | 4.81e-01 | 80.4% | 75.5% |
| 3655225 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 49.0 | 5.12e-01 | 92.9% | 84.0% |
| 5000639 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 46.0 | 3.50e-01 | 82.1% | 29.7% |
| 5036301 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.68 | 42.0 | 4.64e-01 | 73.2% | 85.0% |
| 3262703 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 45.0 | 4.71e-01 | 87.5% | 82.0% |
| 3292956 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.65 | 48.0 | 5.11e-01 | 91.1% | 90.0% |
| 2722273 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.64 | 40.0 | 4.00e-01 | 82.1% | 60.3% |
| 4942956 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.63 | 41.0 | 4.29e-01 | 83.9% | 74.0% |
| 4991697 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.63 | 48.0 | 3.78e-01 | 82.1% | 57.0% |
| 4989647 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 41.0 | 4.12e-01 | 83.9% | 69.1% |
| 5025138 | 101.1.10.80 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF | 0.62 | 56.0 | 3.75e-01 | 98.2% | 28.5% |
| 5073855 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.62 | 47.0 | 3.58e-01 | 82.1% | 49.2% |
| 3758626 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.62 | 56.0 | 5.29e-01 | 98.2% | 86.2% |
| 3808970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 50.0 | 5.25e-01 | 100.0% | 98.0% |
| 3251327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 41.0 | 4.18e-01 | 85.7% | 70.9% |
| 3983892 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.61 | 47.0 | 3.74e-01 | 83.9% | 46.1% |
| 4929903 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.61 | 46.0 | 3.75e-01 | 82.1% | 61.0% |
| 4287145 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.60 | 55.0 | 5.41e-01 | 100.0% | 96.7% |
| 4376466 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.60 | 47.0 | 4.06e-01 | 83.9% | 77.6% |
| 3537939 | 386.1.1.316 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30902 | 0.60 | 36.0 | 3.95e-01 | 73.2% | 73.3% |
| 4588738 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.58 | 45.0 | 3.91e-01 | 83.9% | 76.5% |
| 4964214 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.58 | 39.0 | 3.99e-01 | 80.4% | 70.9% |
| 3882068 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 35.0 | 3.66e-01 | 82.1% | 68.0% |
| 3254253 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.57 | 45.0 | 3.32e-01 | 87.5% | 65.8% |
| 3593533 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 43.0 | 3.64e-01 | 83.9% | 72.0% |
| 3397452 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 34.0 | 3.36e-01 | 78.6% | 53.3% |
| 1831655 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.57 | 49.0 | 4.80e-01 | 100.0% | 98.4% |
| 4233259 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.56 | 45.0 | 3.62e-01 | 89.3% | 87.0% |
| 4929178 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.56 | 46.0 | 3.11e-01 | 87.5% | 25.4% |
| 3575430 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 38.0 | 4.06e-01 | 85.7% | 74.0% |
| 3920058 | 708.1.2.10 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 | 0.56 | 44.0 | 3.26e-01 | 85.7% | 85.4% |
| 3794324 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 33.0 | 3.09e-01 | 78.6% | 45.7% |
| 3401727 | 4.12.1.0 ↗ | beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain | 0.55 | 42.0 | 3.34e-01 | 83.9% | 80.9% |
| 5062906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.91e-01 | 78.6% | 90.0% |
| 3961261 | 5.1.4.471 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NHL | 0.54 | 38.0 | 2.60e-01 | 78.6% | 19.5% |
| 3274279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 38.0 | 3.51e-01 | 82.1% | 75.3% |
| 3935829 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 32.0 | 3.18e-01 | 78.6% | 54.2% |
| 4954874 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 38.0 | 3.48e-01 | 76.8% | 58.7% |
| 3365759 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 30.0 | 3.44e-01 | 73.2% | 80.0% |
| 3717834 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.52 | 36.0 | 2.90e-01 | 92.9% | 31.9% |
| 3731757 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.52 | 35.0 | 3.76e-01 | 71.4% | 95.6% |
| 3479736 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.37e-01 | 92.9% | 90.8% |
| 4011521 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 37.0 | 3.45e-01 | 94.6% | 60.0% |
| 3781329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 35.0 | 3.27e-01 | 80.4% | 52.5% |
| 3467249 | 376.1.4.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 | 0.51 | 41.0 | 4.00e-01 | 92.9% | 92.3% |
| 3595832 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.51 | 35.0 | 3.58e-01 | 87.5% | 78.2% |
| 3601077 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.51 | 36.0 | 3.44e-01 | 92.9% | 62.9% |