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IMGVR_UViG_2802429591_000003-2802429591-2805863895

Arc-Vir

IMGVR_UViG_2802429591_000003-2802429591-2805863895

Identity

Kingdom:
archaea

Quality

74.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-102
PDB
Domain cluster: rep: IMGVR_UViG_3300029589_000028-3300029589-Ga0245106_10125637__D28-122
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.65 46.0 3.49e-01 75.0% 48.0%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 44.0 3.19e-01 84.0% 41.7%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 3.97e-01 93.0% 78.3%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 4.24e-01 85.0% 100.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 43.0 3.02e-01 84.0% 35.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.34e-01 95.0% 97.5%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.74e-01 80.0% 76.7%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.79e-01 80.0% 93.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 37.0 3.14e-01 73.0% 49.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.84e-01 82.0% 100.0%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.39e-01 70.0% 76.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1563800 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.64 44.0 3.89e-01 71.0% 67.6%
4986643 2484.1.1.148 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.61 43.0 2.99e-01 74.0% 31.0%
3611797 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 44.0 2.99e-01 81.0% 21.1%
5000727 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 33.0 4.28e-01 76.0% 100.0%
4364336 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.60 34.0 4.24e-01 76.0% 100.0%
3190757 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.59 34.0 4.09e-01 80.0% 93.3%
4937945 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 44.0 4.36e-01 80.0% 93.2%
1841030 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.58 38.0 3.78e-01 100.0% 63.2%
3553885 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 50.0 4.53e-01 99.0% 94.8%
3765831 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 39.0 3.74e-01 71.0% 61.7%
5011152 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 32.0 3.91e-01 78.0% 100.0%
None — 0.55 40.0 2.70e-01 83.0% 19.0%
3735485 5.1.4.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF6454 0.55 45.0 3.15e-01 89.0% 85.5%
3849724 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.54 44.0 2.86e-01 89.0% 72.1%
3490946 5.1.5.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BCAS3_WD40 0.54 39.0 2.63e-01 75.0% 23.4%
1622905 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.54 35.0 4.06e-01 83.0% 95.7%
3573692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.55e-01 83.0% 60.5%
3637283 5.1.4.441 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.53 39.0 2.70e-01 78.0% 28.1%
3932304 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.24e-01 74.0% 59.4%
3496098 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 40.0 3.51e-01 81.0% 99.4%
3342409 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.53 37.0 2.81e-01 73.0% 100.0%
3322026 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.53 42.0 3.71e-01 89.0% 63.2%
None — 0.52 39.0 3.54e-01 80.0% 67.1%
1716100 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 36.0 3.39e-01 70.0% 76.9%
3338423 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.51 37.0 3.30e-01 77.0% 77.3%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.51 44.0 4.34e-01 100.0% 90.7%
3486812 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.51 36.0 3.14e-01 73.0% 57.4%
4012405 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 42.0 2.76e-01 90.0% 96.9%