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IMGVR_UViG_2802429654_000001-2802429654-2806139873

Arc-Vir

IMGVR_UViG_2802429654_000001-2802429654-2806139873

Identity

Kingdom:
archaea

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-264
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.76 50.0 5.81e-01 83.3% 97.1%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 6.26e-01 85.3% 98.8%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 5.47e-01 82.4% 90.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 42.0 5.21e-01 82.4% 98.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 5.20e-01 85.3% 83.7%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.61e-01 100.0% 72.2%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.80e-01 94.1% 72.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.72e-01 82.4% 72.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.75e-01 84.3% 76.1%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 5.31e-01 84.3% 100.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 47.0 5.19e-01 91.2% 91.4%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 5.06e-01 84.3% 100.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 4.35e-01 82.4% 65.7%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.46e-01 83.3% 100.0%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.69e-01 92.2% 80.9%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.33e-01 83.3% 65.2%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 47.0 4.55e-01 96.1% 70.2%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.63 36.0 4.08e-01 93.1% 76.7%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.63 42.0 4.74e-01 85.3% 98.6%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.62 45.0 4.98e-01 79.4% 97.5%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 44.0 4.44e-01 83.3% 73.8%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.62 35.0 4.20e-01 93.1% 85.1%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.52e-01 79.4% 80.2%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 40.0 4.60e-01 98.0% 97.1%
3uc4A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 39.0 4.19e-01 72.5% 77.6%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 44.0 4.54e-01 100.0% 82.1%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 43.0 4.76e-01 87.3% 97.5%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 44.0 3.54e-01 85.3% 38.8%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 35.0 4.01e-01 78.4% 78.7%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 36.0 3.82e-01 78.4% 68.2%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.60 37.0 3.99e-01 78.4% 74.7%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.59 42.0 4.61e-01 91.2% 96.2%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 40.0 4.39e-01 70.6% 86.7%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.59 43.0 4.66e-01 87.3% 97.5%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 42.0 3.26e-01 76.5% 83.3%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 37.0 2.93e-01 81.4% 31.9%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 3.80e-01 70.6% 63.5%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 4.27e-01 70.6% 91.4%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 31.0 2.87e-01 94.1% 38.1%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.56 31.0 3.52e-01 93.1% 72.2%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 36.0 3.92e-01 94.1% 77.6%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 35.0 2.87e-01 81.4% 32.2%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 31.0 3.72e-01 80.4% 83.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 36.0 3.07e-01 94.1% 39.5%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.55 42.0 4.00e-01 95.1% 70.3%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 42.0 3.93e-01 84.3% 85.5%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.19e-01 81.4% 88.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.04e-01 93.1% 71.7%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.52 45.0 3.21e-01 98.0% 72.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 45.0 3.63e-01 96.1% 77.5%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.51 40.0 3.57e-01 100.0% 58.2%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 34.0 3.62e-01 84.3% 81.2%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 36.0 3.25e-01 75.5% 81.5%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026717 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 51.0 5.99e-01 80.4% 95.7%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 43.0 5.41e-01 91.2% 95.0%
2733 101.1.2.117 alpha arrays › HTH › HTH › winged helix domain › F-112 0.76 50.0 5.81e-01 83.3% 97.1%
4981204 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 6.06e-01 84.3% 98.9%
4962955 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.71 49.0 5.47e-01 85.3% 91.3%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 49.0 4.52e-01 83.3% 55.4%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.71 53.0 4.87e-01 84.3% 61.2%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 48.0 4.19e-01 84.3% 46.7%
5065094 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.71 49.0 4.60e-01 100.0% 58.4%
4964629 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.70 45.0 5.28e-01 79.4% 97.1%
4994340 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 47.0 4.20e-01 84.3% 50.0%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 5.41e-01 91.2% 97.3%
4983405 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 46.0 3.93e-01 83.3% 42.9%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 46.0 4.60e-01 84.3% 66.7%
4971686 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 46.0 4.63e-01 82.4% 67.6%
4028119 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 44.0 5.17e-01 83.3% 95.7%
5014176 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 47.0 4.05e-01 82.4% 45.6%
4027193 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 5.31e-01 85.3% 88.9%
3638163 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.68 49.0 4.88e-01 84.3% 72.9%
5077022 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 46.0 4.72e-01 83.3% 72.0%
3414623 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.67 49.0 3.54e-01 85.3% 26.4%
3731219 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.67 53.0 4.95e-01 84.3% 76.8%
4322962 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.67 43.0 5.01e-01 83.3% 95.7%
5035522 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 46.0 4.62e-01 84.3% 68.6%
4999546 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 49.0 5.08e-01 87.3% 82.1%
4961270 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 55.0 5.45e-01 98.0% 85.7%
3187002 101.1.2.635 alpha arrays › HTH › HTH › winged helix domain › CDT1_C, PF26121 0.67 52.0 3.74e-01 85.3% 28.8%
4997123 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 51.0 4.09e-01 99.0% 41.5%
3878277 108.1.1.20 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.66 47.0 4.93e-01 100.0% 80.0%
5054914 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.13e-01 98.0% 79.1%
4000249 101.1.2.570 alpha arrays › HTH › HTH › winged helix domain › DUF7517 0.65 51.0 5.48e-01 90.2% 100.0%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.98e-01 85.3% 83.2%
3167163 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.65 50.0 5.16e-01 91.2% 88.4%
5045205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.83e-01 92.2% 83.3%
4976218 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 47.0 4.45e-01 85.3% 64.2%
4934296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.62e-01 83.3% 72.4%
3921225 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.64 46.0 5.16e-01 83.3% 100.0%
5071269 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 46.0 3.66e-01 89.2% 36.7%
2694 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.64 51.0 5.25e-01 84.3% 91.5%
4978855 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 45.0 4.27e-01 84.3% 62.5%
4943782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 4.24e-01 84.3% 61.7%
4545670 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.63 49.0 4.97e-01 97.1% 84.8%
5080331 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 47.0 4.72e-01 98.0% 78.1%
5047500 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 53.0 4.14e-01 99.0% 44.3%
3519458 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.62 45.0 4.93e-01 75.5% 97.5%
5046292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 4.83e-01 88.2% 93.8%
4948099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.04e-01 100.0% 83.6%
3166713 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.61 53.0 4.66e-01 94.1% 65.3%
3982680 101.1.2.159 alpha arrays › HTH › HTH › winged helix domain › BsuBI_PstI_RE_N 0.61 54.0 4.72e-01 96.1% 69.3%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.61 48.0 3.71e-01 85.3% 43.3%
3415465 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.61 40.0 4.36e-01 82.4% 81.2%
3319253 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.61 45.0 4.74e-01 87.3% 88.9%
3515401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.55e-01 85.3% 74.2%
3743915 101.1.2.73 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.60 53.0 5.16e-01 98.0% 87.8%
3818460 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.81e-01 86.3% 95.2%
4978090 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 45.0 3.56e-01 100.0% 37.7%
3820802 101.1.2.529 alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.60 44.0 4.31e-01 85.3% 71.8%
3738706 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.59 54.0 5.11e-01 100.0% 97.5%
5034013 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.59 38.0 4.22e-01 98.0% 86.7%
4987785 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 36.0 4.23e-01 99.0% 95.4%
3268785 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.73e-01 95.1% 85.6%
4544583 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.58 53.0 4.78e-01 100.0% 85.7%
4668421 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.58 36.0 3.99e-01 98.0% 78.8%
4978412 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 40.0 3.36e-01 92.2% 42.3%
4958413 873.1.1.20 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 0.57 44.0 3.83e-01 84.3% 73.3%
3792911 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.57 44.0 4.24e-01 85.3% 73.0%
5047465 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.57 44.0 4.07e-01 85.3% 79.1%
4994660 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.58e-01 100.0% 83.6%
4953964 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 42.0 4.17e-01 84.3% 74.5%
3537242 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.53 42.0 4.30e-01 90.2% 93.0%
3471082 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 35.0 3.48e-01 79.4% 65.1%
4416593 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.51 34.0 3.56e-01 94.1% 75.6%
3413369 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.51 42.0 3.86e-01 93.1% 69.2%
140759 873.1.1.6 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF2507 0.51 40.0 3.63e-01 100.0% 61.4%
D2 medium residues 95-160
PDB