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IMGVR_UViG_2853968202_000001-2853968202-2853970039
Arc-VirIMGVR_UViG_2853968202_000001-2853968202-2853970039
Identity
- Kingdom:
- archaea
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-105
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.90 | 65.0 | 4.38e-01 | 75.6% | 31.9% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.87 | 61.0 | 4.62e-01 | 75.6% | 34.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.87 | 64.0 | 4.41e-01 | 77.8% | 34.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 61.0 | 4.76e-01 | 75.6% | 50.5% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.86 | 61.0 | 4.67e-01 | 75.6% | 36.7% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.83 | 59.0 | 5.86e-01 | 75.6% | 76.6% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 59.0 | 4.89e-01 | 75.6% | 44.7% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 57.0 | 5.44e-01 | 75.6% | 66.0% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 56.0 | 6.02e-01 | 75.6% | 97.3% |
| 1m56C02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.80 | 56.0 | 3.62e-01 | 75.6% | 18.4% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.79 | 66.0 | 6.16e-01 | 100.0% | 77.2% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 54.0 | 5.70e-01 | 77.8% | 84.6% |
| 7csoA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.77 | 54.0 | 3.42e-01 | 75.6% | 26.8% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 68.0 | 5.48e-01 | 100.0% | 87.1% |
| 4rg6A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 59.0 | 4.94e-01 | 86.7% | 53.2% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.75 | 62.0 | 4.24e-01 | 100.0% | 29.8% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 58.0 | 5.96e-01 | 88.9% | 97.6% |
| 1dd3A01 | 1.20.5.710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.74 | 61.0 | 5.74e-01 | 97.8% | 82.5% |
| 1zkrB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.72 | 48.0 | 3.38e-01 | 71.1% | 25.5% |
| 2wvxA04 | 1.20.1610.10 | Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains | 0.72 | 56.0 | 3.81e-01 | 88.9% | 32.9% |
| 3bh1A02 | 1.20.1570.10 | Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like | 0.71 | 62.0 | 4.80e-01 | 100.0% | 74.3% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.70 | 50.0 | 4.00e-01 | 75.6% | 36.2% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.69 | 56.0 | 4.27e-01 | 100.0% | 50.4% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.69 | 57.0 | 4.69e-01 | 95.6% | 73.5% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 46.0 | 4.73e-01 | 75.6% | 79.1% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 46.0 | 4.13e-01 | 75.6% | 64.7% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 48.0 | 4.35e-01 | 77.8% | 58.7% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 53.0 | 4.97e-01 | 100.0% | 91.9% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.64 | 55.0 | 4.51e-01 | 100.0% | 66.7% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 52.0 | 4.63e-01 | 93.3% | 62.7% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.63 | 51.0 | 4.59e-01 | 100.0% | 72.9% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.62 | 49.0 | 4.31e-01 | 97.8% | 87.2% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.62 | 49.0 | 4.19e-01 | 93.3% | 95.1% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 48.0 | 3.66e-01 | 95.6% | 60.2% |
| 3qfeB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 52.0 | 3.20e-01 | 100.0% | 27.2% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 51.0 | 3.91e-01 | 100.0% | 52.6% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.60 | 42.0 | 2.88e-01 | 75.6% | 20.5% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.59 | 48.0 | 3.78e-01 | 100.0% | 56.9% |
| 4qfeK02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 4.39e-01 | 73.3% | 97.1% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.57 | 40.0 | 3.64e-01 | 75.6% | 50.7% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.56 | 47.0 | 4.34e-01 | 100.0% | 91.8% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.55 | 43.0 | 3.95e-01 | 100.0% | 100.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284374 | 109.3.1.156 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF8129 | 0.94 | 86.0 | 7.70e-01 | 100.0% | 75.0% |
| 4889091 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.92 | 66.0 | 3.75e-01 | 75.6% | 9.3% |
| 3713021 | 639.1.1.0 ↗ | alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA | 0.87 | 77.0 | 7.51e-01 | 100.0% | 96.0% |
| 3693968 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 69.0 | 4.66e-01 | 95.6% | 53.8% |
| 4993658 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.80 | 71.0 | 5.27e-01 | 100.0% | 61.1% |
| 5061334 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.80 | 55.0 | 4.56e-01 | 75.6% | 41.2% |
| 5060653 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.80 | 55.0 | 4.87e-01 | 75.6% | 50.8% |
| 4981741 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 54.0 | 4.97e-01 | 75.6% | 55.0% |
| 3590608 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.78 | 67.0 | 4.13e-01 | 100.0% | 21.1% |
| 3275573 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.78 | 68.0 | 3.78e-01 | 100.0% | 8.3% |
| 4179237 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.78 | 66.0 | 5.92e-01 | 97.8% | 81.5% |
| 3579430 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.78 | 69.0 | 4.63e-01 | 100.0% | 29.4% |
| 5061758 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.78 | 52.0 | 4.46e-01 | 73.3% | 42.7% |
| 4981746 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 54.0 | 4.71e-01 | 75.6% | 54.3% |
| 3740688 | 7076.1.1.0 ↗ | 0.77 | 54.0 | 4.59e-01 | 75.6% | 53.3% | |
| 5060144 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.77 | 52.0 | 4.52e-01 | 73.3% | 45.7% |
| 3948449 | 639.1.1.1 ↗ | alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › HHA | 0.77 | 66.0 | 5.66e-01 | 100.0% | 66.2% |
| 3326195 | 109.4.1.2261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30481 | 0.76 | 66.0 | 4.28e-01 | 100.0% | 27.8% |
| 3630736 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.75 | 64.0 | 3.61e-01 | 97.8% | 11.4% |
| 3862034 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.75 | 68.0 | 5.36e-01 | 97.8% | 80.0% |
| 3476298 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 61.0 | 4.26e-01 | 95.6% | 28.0% |
| 3804193 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.74 | 60.0 | 3.97e-01 | 100.0% | 21.4% |
| 4983596 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.74 | 49.0 | 4.47e-01 | 73.3% | 49.2% |
| 3470962 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.73 | 67.0 | 5.32e-01 | 100.0% | 83.5% |
| 3984193 | 633.16.2.2 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 | 0.73 | 62.0 | 5.30e-01 | 97.8% | 69.3% |
| 3718917 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.73 | 50.0 | 4.24e-01 | 77.8% | 44.0% |
| 3214140 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.73 | 66.0 | 4.97e-01 | 100.0% | 71.0% |
| 3248284 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.71 | 57.0 | 4.56e-01 | 100.0% | 77.1% |
| 3828734 | 109.4.1.1280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long | 0.71 | 58.0 | 3.46e-01 | 100.0% | 12.1% |
| 5059485 | 7076.1.1.0 ↗ | 0.70 | 46.0 | 4.35e-01 | 73.3% | 54.5% | |
| 3970705 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.68 | 48.0 | 4.03e-01 | 75.6% | 45.0% |
| 3901696 | 192.8.1.240 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 | 0.65 | 45.0 | 3.83e-01 | 77.8% | 43.5% |
| 3512231 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.62 | 43.0 | 4.74e-01 | 73.3% | 94.3% |
| 3672772 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.61 | 40.0 | 3.63e-01 | 71.1% | 78.6% |
| 3721862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.48e-01 | 86.7% | 62.0% |