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IMGVR_UViG_2853968202_000001-2853968202-2853970040
Arc-VirIMGVR_UViG_2853968202_000001-2853968202-2853970040
Identity
- Kingdom:
- archaea
Quality
73.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 226-328
Domain cluster:
rep: IMGVR_UViG_3300039190_000268-3300039190-Ga0399989_008834_3368_4963__D378-483
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.86 | 67.0 | 7.02e-01 | 99.0% | 89.2% |
| 2g9zA02 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.57 | 48.0 | 4.05e-01 | 90.3% | 86.6% |
| 1gtkA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 34.0 | 3.51e-01 | 94.2% | 65.0% |
| 3l23A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.54 | 43.0 | 3.24e-01 | 89.3% | 46.1% |
| 6cngA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.53 | 48.0 | 4.46e-01 | 100.0% | 96.1% |
| 1lbqA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.86e-01 | 88.3% | 94.2% |
| 1mzjB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 3.89e-01 | 99.0% | 91.3% |
| 1ufvA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 3.69e-01 | 92.2% | 73.3% |
| 1vjkA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 33.0 | 3.61e-01 | 100.0% | 78.2% |
| 1ei9A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.30e-01 | 99.0% | 85.7% |
| 6ki3A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 45.0 | 3.26e-01 | 100.0% | 90.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.80 | 70.0 | 4.93e-01 | 100.0% | 33.9% |
| 4889260 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.74 | 67.0 | 4.90e-01 | 100.0% | 38.1% |
| 3387325 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.71 | 46.0 | 3.87e-01 | 94.2% | 39.4% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.67 | 55.0 | 3.99e-01 | 100.0% | 32.7% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.66 | 59.0 | 4.15e-01 | 100.0% | 32.8% |
| 3361769 | 3617.1.1.0 ↗ | a+b three layers › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E | 0.66 | 50.0 | 5.13e-01 | 93.2% | 84.0% |
| 3423646 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.66 | 51.0 | 5.20e-01 | 94.2% | 85.0% |
| 4031028 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 54.0 | 3.89e-01 | 100.0% | 32.5% |
| 5083079 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 54.0 | 3.73e-01 | 100.0% | 28.0% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 56.0 | 3.99e-01 | 100.0% | 32.7% |
| 4275987 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.61 | 51.0 | 4.72e-01 | 91.3% | 78.5% |
| 4265507 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 51.0 | 4.55e-01 | 93.2% | 76.0% |
| 4974077 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.60 | 51.0 | 5.22e-01 | 90.3% | 96.9% |
| 4576389 | 7523.1.1.6 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Porphobil_deam | 0.60 | 35.0 | 4.27e-01 | 80.6% | 96.7% |
| 4484870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 51.0 | 4.59e-01 | 94.2% | 74.5% |
| 4263687 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.59 | 51.0 | 4.50e-01 | 94.2% | 75.3% |
| 4408770 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.59 | 50.0 | 4.46e-01 | 94.2% | 74.0% |
| 4183870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.58 | 50.0 | 4.43e-01 | 94.2% | 78.7% |
| 4093705 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.58 | 50.0 | 4.39e-01 | 94.2% | 72.9% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.58 | 52.0 | 3.65e-01 | 100.0% | 45.3% |
| 4022567 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 49.0 | 4.55e-01 | 95.1% | 80.0% |
| 3998343 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 4.73e-01 | 95.1% | 94.0% |
| 4030171 | 2485.1.1.123 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26962 | 0.56 | 35.0 | 3.58e-01 | 82.5% | 64.0% |
| 3822782 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 3.20e-01 | 89.3% | 28.6% |
| 2765405 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.55 | 44.0 | 4.11e-01 | 94.2% | 70.1% |
| 5046212 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.55 | 39.0 | 3.09e-01 | 100.0% | 34.2% |
| 5007476 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.54 | 46.0 | 4.29e-01 | 92.2% | 74.6% |
| 2722070 | 301.13.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C | 0.54 | 49.0 | 4.95e-01 | 100.0% | 98.1% |
| 3982054 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.54 | 50.0 | 4.05e-01 | 100.0% | 77.4% |
| 4073364 | 2005.1.1.38 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 | 0.52 | 44.0 | 3.18e-01 | 94.2% | 54.5% |
| 3500083 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.51 | 43.0 | 3.07e-01 | 94.2% | 79.1% |
| 5058266 | 2487.1.1.2 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PEP-utilizers | 0.51 | 37.0 | 3.82e-01 | 100.0% | 83.2% |
| 3653688 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 45.0 | 3.94e-01 | 100.0% | 76.8% |
| 3169604 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.50 | 44.0 | 3.44e-01 | 99.0% | 71.3% |
D2
medium
residues 89-121_147-220
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.78 | 72.0 | 6.02e-01 | 98.1% | 66.9% |
| 6i9gA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.75 | 70.0 | 5.93e-01 | 100.0% | 89.3% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 26.0 | 3.12e-01 | 76.6% | 72.1% |
| 4k3bA04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 25.0 | 2.92e-01 | 80.4% | 65.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.75 | 65.0 | 4.89e-01 | 100.0% | 40.4% |
| 3928446 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.59 | 43.0 | 3.17e-01 | 75.7% | 33.2% |
| 3629758 | 577.1.1.1 ↗ | alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD | 0.53 | 24.0 | 2.90e-01 | 84.1% | 61.6% |
| 4345169 | 101.1.1.33 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 36.0 | 3.30e-01 | 74.8% | 89.0% |