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IMGVR_UViG_2853968202_000001-2853968202-2853970059

Arc-Vir

IMGVR_UViG_2853968202_000001-2853968202-2853970059

Identity

Kingdom:
archaea

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-70
PDB
Domain cluster: rep: IMGVR_UViG_2508501020_000001-2508501020-2508593004__D21-102
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.71 62.0 5.27e-01 100.0% 98.1%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.65 46.0 4.05e-01 85.7% 50.0%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 55.0 4.89e-01 100.0% 66.3%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.64 56.0 4.60e-01 100.0% 68.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.11e-01 100.0% 76.2%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 48.0 3.66e-01 84.1% 56.3%
4x30A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 49.0 3.77e-01 84.1% 91.7%
6ibkA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 47.0 4.10e-01 81.0% 97.9%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 47.0 3.16e-01 81.0% 48.3%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 48.0 3.90e-01 84.1% 94.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 46.0 3.03e-01 81.0% 90.4%
2oayA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 47.0 3.49e-01 84.1% 71.1%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 47.0 3.72e-01 84.1% 92.1%
1jmoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 48.0 3.67e-01 84.1% 91.3%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 48.0 3.56e-01 84.1% 53.3%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 47.0 3.64e-01 84.1% 85.6%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 47.0 3.62e-01 84.1% 90.7%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.64e-01 100.0% 85.9%
2oplA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 45.0 3.30e-01 81.0% 80.8%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 48.0 3.51e-01 90.5% 36.3%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 48.0 4.06e-01 93.7% 72.7%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.59 39.0 3.39e-01 77.8% 41.3%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.73e-01 81.0% 80.8%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.58 51.0 4.41e-01 100.0% 84.8%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 3.62e-01 96.8% 74.0%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 47.0 4.43e-01 92.1% 87.3%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.58 43.0 3.19e-01 84.1% 75.1%
1svbA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.58 48.0 3.80e-01 93.7% 77.9%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.58 46.0 3.63e-01 90.5% 52.8%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.58 41.0 2.88e-01 90.5% 21.7%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.76e-01 98.4% 72.7%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.02e-01 100.0% 84.7%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 42.0 3.27e-01 84.1% 39.1%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.54 41.0 3.60e-01 82.5% 71.3%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 40.0 3.37e-01 81.0% 88.1%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.20e-01 100.0% 50.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 40.0 2.66e-01 81.0% 47.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.83e-01 93.7% 32.0%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 42.0 2.85e-01 96.8% 24.4%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 43.0 3.23e-01 100.0% 55.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3805158 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 53.0 4.54e-01 93.7% 75.2%
4380184 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.63 54.0 4.91e-01 98.4% 98.9%
3965134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 48.0 3.98e-01 84.1% 49.6%
3378324 246.2.1.3 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.62 45.0 2.83e-01 77.8% 89.4%
3932045 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.62 54.0 3.93e-01 100.0% 38.3%
4966527 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.61 46.0 4.19e-01 93.7% 58.9%
4008896 11.1.1.1286 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.60 55.0 4.32e-01 100.0% 95.2%
86484 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.60 46.0 2.91e-01 84.1% 47.7%
1813127 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.60 51.0 3.01e-01 100.0% 83.9%
3173222 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.59 51.0 4.23e-01 98.4% 99.1%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.59 50.0 4.13e-01 100.0% 83.2%
4014170 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 3.07e-01 88.9% 33.3%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 3.04e-01 93.7% 22.9%
4929818 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.57 46.0 3.66e-01 90.5% 100.0%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.57 46.0 3.97e-01 95.2% 64.5%
5019287 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 41.0 3.75e-01 77.8% 61.2%
3396749 5.1.5.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.57 46.0 2.96e-01 93.7% 31.3%
3701015 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 50.0 3.13e-01 100.0% 74.7%
3404297 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.56 40.0 4.29e-01 84.1% 87.3%
3408388 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.56 43.0 4.04e-01 84.1% 68.8%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 46.0 4.22e-01 93.7% 87.1%
4301874 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.55 44.0 2.80e-01 93.7% 24.2%
3230984 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 45.0 3.54e-01 93.7% 61.4%
4979396 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.54 47.0 3.65e-01 100.0% 77.9%
3283724 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.54 40.0 3.64e-01 85.7% 66.3%
3173290 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 46.0 2.90e-01 100.0% 89.6%
3580069 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.89e-01 100.0% 78.9%
3734384 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.52e-01 85.7% 66.0%
4266100 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 45.0 2.82e-01 100.0% 88.8%
3934568 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 41.0 3.53e-01 90.5% 95.5%
5054141 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.52 35.0 3.82e-01 84.1% 88.0%
3777518 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.04e-01 98.4% 40.4%
3914794 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.18e-01 98.4% 48.3%
4232261 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 45.0 3.38e-01 100.0% 56.4%
3409753 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 38.0 3.33e-01 82.5% 94.3%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 2.79e-01 100.0% 20.1%
3626487 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.51 40.0 3.26e-01 87.3% 68.8%
4055253 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.51 43.0 2.74e-01 100.0% 87.8%
3293481 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.51 45.0 3.61e-01 98.4% 99.2%
3800238 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 43.0 3.00e-01 100.0% 39.6%
3513335 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.50 45.0 3.11e-01 100.0% 56.3%
3500564 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 40.0 3.45e-01 90.5% 63.8%
3695223 5.1.4.515 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26607 0.50 42.0 2.69e-01 100.0% 90.1%