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IMGVR_UViG_2860317346_000001-2860317346-2860319242

Arc-Vir

IMGVR_UViG_2860317346_000001-2860317346-2860319242

Identity

Kingdom:
archaea

Quality

43.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-96
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.90 82.0 7.70e-01 100.0% 81.2%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.88 83.0 6.79e-01 100.0% 86.2%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.88 82.0 6.79e-01 100.0% 74.6%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.81 57.0 6.47e-01 98.8% 96.9%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 70.0 7.13e-01 98.8% 98.8%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.78 72.0 6.75e-01 100.0% 93.2%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 69.0 5.55e-01 98.8% 80.5%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.75 65.0 6.05e-01 100.0% 76.4%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.73 63.0 6.43e-01 100.0% 98.8%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 66.0 6.15e-01 100.0% 93.5%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.71 65.0 6.33e-01 100.0% 100.0%
1n10A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.70 63.0 5.74e-01 100.0% 96.5%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.70 62.0 5.55e-01 96.5% 91.7%
3m3gA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.69 62.0 5.51e-01 97.7% 94.2%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.66 54.0 4.92e-01 87.2% 71.4%
2bb3A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.66 39.0 3.93e-01 100.0% 57.3%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.66 55.0 4.88e-01 91.9% 91.1%
2jysA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 52.0 5.14e-01 86.0% 91.2%
1hd5A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.64 57.0 4.33e-01 100.0% 88.8%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 56.0 5.38e-01 100.0% 85.7%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 45.0 5.04e-01 100.0% 96.9%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 46.0 3.76e-01 79.1% 99.4%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 45.0 4.94e-01 100.0% 97.1%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 48.0 4.65e-01 84.9% 80.8%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 49.0 4.67e-01 88.4% 81.7%
1uh9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 51.0 4.27e-01 91.9% 73.8%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 52.0 5.34e-01 100.0% 100.0%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.60 44.0 3.78e-01 100.0% 47.5%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 42.0 3.76e-01 100.0% 51.6%
2i87A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 44.0 4.74e-01 100.0% 94.5%
3ndcA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 41.0 3.71e-01 100.0% 52.8%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 3.86e-01 100.0% 61.3%
4pbxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 4.08e-01 100.0% 73.9%
1x5lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.14e-01 100.0% 79.5%
2zvbA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 40.0 3.55e-01 100.0% 51.6%
3nutB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 39.0 3.46e-01 100.0% 51.6%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 45.0 4.57e-01 100.0% 95.3%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.49e-01 100.0% 89.4%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.62e-01 90.7% 57.1%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.17e-01 93.0% 51.4%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.40e-01 93.0% 64.4%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.87e-01 100.0% 78.0%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.82e-01 100.0% 71.8%
4n68A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.92e-01 100.0% 76.8%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.82e-01 100.0% 79.6%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.65e-01 100.0% 67.9%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4556003 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.93 75.0 7.66e-01 91.9% 86.7%
5081033 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.92 87.0 6.37e-01 100.0% 76.0%
5058903 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 6.47e-01 100.0% 80.0%
3596090 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.91 87.0 7.60e-01 100.0% 73.3%
4948679 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 5.60e-01 100.0% 45.1%
3509068 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 6.35e-01 100.0% 79.5%
4943460 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 86.0 6.50e-01 100.0% 79.5%
3698542 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 86.0 6.28e-01 100.0% 79.0%
3670775 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 7.57e-01 100.0% 71.7%
3836120 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.91 86.0 6.35e-01 100.0% 84.6%
4015760 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 86.0 6.35e-01 100.0% 82.1%
3684523 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.90 86.0 7.41e-01 100.0% 68.8%
3374701 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.90 85.0 6.48e-01 100.0% 77.2%
3966248 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 82.0 7.26e-01 100.0% 71.3%
4129914 1.1.2.31 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.89 84.0 6.07e-01 100.0% 56.7%
4886549 275.1.1.1 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.89 84.0 6.71e-01 100.0% 78.7%
3360997 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.89 84.0 6.86e-01 100.0% 71.7%
4026183 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.88 83.0 6.71e-01 100.0% 80.7%
1746098 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.88 83.0 6.43e-01 100.0% 74.4%
2886100 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 80.0 5.98e-01 100.0% 68.6%
5056546 3349.1.1.3 a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.84 78.0 4.75e-01 100.0% 30.3%
3183266 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.84 77.0 6.64e-01 100.0% 88.5%
5030460 1.1.2.23 beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.84 78.0 4.72e-01 100.0% 29.4%
3696793 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.84 77.0 6.95e-01 100.0% 91.3%
4498374 1.1.2.23 beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.83 78.0 5.43e-01 100.0% 53.6%
5053172 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 73.0 7.43e-01 100.0% 96.5%
4890084 1.1.2.31 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.82 76.0 6.64e-01 100.0% 68.9%
5060748 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 76.0 6.91e-01 100.0% 77.3%
4887355 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.82 74.0 6.41e-01 100.0% 66.1%
3187087 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 75.0 6.54e-01 100.0% 88.8%
5037727 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 72.0 7.28e-01 98.8% 96.5%
5074983 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 73.0 7.17e-01 100.0% 92.2%
2968637 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.81 75.0 5.89e-01 100.0% 79.6%
4027672 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.80 75.0 6.95e-01 100.0% 87.6%
5053174 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 71.0 7.04e-01 100.0% 91.1%
4021338 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 74.0 7.05e-01 100.0% 95.0%
3927447 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.80 75.0 6.80e-01 100.0% 89.1%
3357414 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.80 74.0 6.33e-01 100.0% 89.2%
3973129 1.13.1.0 beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain 0.79 58.0 6.49e-01 100.0% 97.1%
4011478 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 73.0 6.47e-01 100.0% 85.0%
5060218 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 72.0 7.33e-01 98.8% 100.0%
5045002 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 69.0 6.83e-01 98.8% 91.1%
3605376 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 73.0 7.02e-01 100.0% 97.9%
3309021 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 72.0 6.60e-01 100.0% 96.4%
4931749 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 70.0 7.06e-01 100.0% 97.6%
3427279 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 72.0 5.54e-01 100.0% 56.1%
3643011 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.78 72.0 6.17e-01 100.0% 90.0%
4995354 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 70.0 7.08e-01 98.8% 98.8%
5055583 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 70.0 7.03e-01 98.8% 98.8%
3783660 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 71.0 6.73e-01 100.0% 90.0%
3274137 1.1.2.11 beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.77 71.0 6.20e-01 100.0% 84.8%
3948899 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.76 69.0 5.75e-01 100.0% 81.4%
4508340 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 69.0 6.47e-01 100.0% 83.8%
4396535 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 61.0 6.36e-01 100.0% 97.5%
3406944 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 67.0 5.64e-01 100.0% 70.0%
4370157 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.72 66.0 5.53e-01 100.0% 67.8%
4441475 1.1.2.12 beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC 0.71 64.0 6.10e-01 100.0% 86.0%
4115281 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 64.0 5.78e-01 100.0% 95.8%
3010131 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.71 64.0 5.98e-01 100.0% 93.5%
3740727 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 61.0 6.22e-01 96.5% 100.0%
4048983 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 62.0 5.84e-01 100.0% 93.3%
3925828 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 63.0 6.07e-01 100.0% 95.8%
3772228 1.1.2.40 beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.68 60.0 5.28e-01 100.0% 74.6%
3929267 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.68 55.0 4.99e-01 89.5% 75.8%
4429352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 51.0 5.11e-01 100.0% 78.9%
3 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.66 53.0 4.84e-01 87.2% 72.2%
4927010 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 59.0 5.19e-01 98.8% 84.8%
3724372 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 51.0 4.27e-01 86.0% 60.0%
3929755 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 53.0 4.69e-01 90.7% 80.8%
3932187 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 54.0 4.99e-01 90.7% 83.6%
3515104 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 38.0 3.70e-01 93.0% 52.5%
3737912 1.1.1.13 beta barrels › cradle loop barrel › RIFT-related › acid protease › Peptidase_A2_2 0.61 47.0 4.55e-01 84.9% 89.0%
3173885 2484.1.1.307 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A2B 0.60 48.0 4.57e-01 89.5% 90.5%
3513100 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.60 48.0 4.41e-01 91.9% 83.3%
3559341 1.1.1.30 beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.59 49.0 4.21e-01 91.9% 72.1%
4969397 1.1.1.17 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.59 48.0 4.42e-01 91.9% 85.2%
3708577 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 52.0 4.39e-01 100.0% 63.4%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 38.0 4.13e-01 100.0% 89.9%
3428938 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.65e-01 91.9% 56.8%
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.52 35.0 3.88e-01 100.0% 92.3%
3901921 11.1.1.538 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.50 43.0 3.87e-01 100.0% 83.2%