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IMGVR_UViG_2860317346_000001-2860317346-2860319276
Arc-VirIMGVR_UViG_2860317346_000001-2860317346-2860319276
Identity
- Kingdom:
- archaea
Quality
79.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 157-338
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.70 | 61.0 | 6.03e-01 | 98.4% | 87.1% |
| 2wbnA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.67 | 58.0 | 5.93e-01 | 99.5% | 93.8% |
| 3wuhB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 51.0 | 5.28e-01 | 95.1% | 82.9% |
| 1kcfB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.66 | 59.0 | 5.47e-01 | 94.5% | 81.1% |
| 3thxA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.66 | 50.0 | 5.22e-01 | 95.1% | 84.8% |
| 1wkvA03 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 32.0 | 4.18e-01 | 99.5% | 90.0% |
| 5c3uA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 31.0 | 4.15e-01 | 99.5% | 92.7% |
| 1p5jA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 31.0 | 4.10e-01 | 99.5% | 91.7% |
| 5cvcA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 31.0 | 4.08e-01 | 99.5% | 91.8% |
| 4ogcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 52.0 | 5.14e-01 | 94.5% | 89.1% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 36.0 | 3.94e-01 | 72.0% | 73.2% |
| 3aapA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 39.0 | 4.59e-01 | 92.9% | 100.0% |
| 4h0fA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 35.0 | 4.27e-01 | 94.5% | 100.0% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 31.0 | 3.80e-01 | 97.8% | 84.7% |
| 2dstA00 | 3.40.50.12270 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 36.0 | 4.22e-01 | 100.0% | 97.5% |
| 2prsA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 34.0 | 4.04e-01 | 94.5% | 98.2% |
| 5gqoA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 24.0 | 3.17e-01 | 74.7% | 76.3% |
| 1f8fA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 31.0 | 3.50e-01 | 96.2% | 73.7% |
| 4d9gA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 32.0 | 3.83e-01 | 99.5% | 89.9% |
| 3r0xA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 32.0 | 3.84e-01 | 100.0% | 91.1% |
| 2pl1A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 33.0 | 3.93e-01 | 93.4% | 96.7% |
| 3u2sC00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 26.0 | 3.59e-01 | 85.2% | 100.0% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 26.0 | 2.98e-01 | 94.0% | 63.8% |
| 1d5wA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 33.0 | 3.86e-01 | 95.1% | 96.7% |
| 1srrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 33.0 | 3.87e-01 | 94.5% | 97.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 78.0 | 6.82e-01 | 100.0% | 91.4% |
| 4988089 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.77 | 72.0 | 7.09e-01 | 98.4% | 93.2% |
| 3587035 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.76 | 69.0 | 6.60e-01 | 96.7% | 92.4% |
| 4224103 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.74 | 50.0 | 5.29e-01 | 95.6% | 76.9% |
| 3264637 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.70 | 51.0 | 5.45e-01 | 95.6% | 87.1% |
| 4034552 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.69 | 59.0 | 6.01e-01 | 98.4% | 93.1% |
| 3990327 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.68 | 50.0 | 5.37e-01 | 95.1% | 87.7% |
| 134144 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.67 | 58.0 | 5.93e-01 | 99.5% | 93.8% |
| 4524082 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.67 | 58.0 | 5.82e-01 | 98.9% | 90.3% |
| 3580109 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.67 | 36.0 | 3.72e-01 | 94.5% | 53.7% |
| 3178498 | 2484.1.1.57 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt | 0.66 | 59.0 | 4.98e-01 | 95.1% | 83.4% |
| 3699391 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.62 | 54.0 | 3.84e-01 | 94.5% | 71.9% |
| 3947929 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 54.0 | 5.40e-01 | 95.1% | 95.2% |
| 4522332 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.59 | 25.0 | 3.84e-01 | 76.9% | 100.0% |
| 4030708 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.59 | 51.0 | 3.46e-01 | 94.0% | 62.2% |
| None | — | 0.59 | 52.0 | 4.00e-01 | 95.6% | 98.5% | |
| 3171587 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.59 | 51.0 | 3.88e-01 | 93.4% | 98.4% |
| 4971959 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.58 | 30.0 | 3.33e-01 | 99.5% | 59.3% |
| 3402776 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.58 | 43.0 | 4.08e-01 | 75.3% | 95.2% |
| 4505130 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.57 | 38.0 | 4.45e-01 | 86.8% | 96.8% |
| 3937613 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.57 | 41.0 | 4.61e-01 | 89.0% | 100.0% |
| 3590481 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.56 | 40.0 | 3.88e-01 | 86.3% | 65.0% |
| 4530539 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.56 | 39.0 | 3.55e-01 | 99.5% | 53.1% |
| 3843423 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.55 | 39.0 | 4.48e-01 | 80.2% | 99.2% |
| 3561019 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.55 | 39.0 | 4.44e-01 | 81.9% | 100.0% |
| 4304347 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.55 | 35.0 | 4.07e-01 | 93.4% | 90.4% |
| 3781216 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.55 | 40.0 | 4.43e-01 | 90.7% | 95.7% |
| 3932764 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 39.0 | 4.26e-01 | 87.9% | 91.0% |
| 3888095 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 40.0 | 4.46e-01 | 89.6% | 100.0% |
| 4215667 | 7579.1.1.98 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II, PETase | 0.53 | 48.0 | 3.80e-01 | 100.0% | 90.1% |
| 3616473 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.53 | 45.0 | 4.40e-01 | 98.4% | 84.1% |
| 5065269 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.52 | 37.0 | 4.02e-01 | 79.7% | 87.3% |
| 3636281 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.51 | 45.0 | 4.43e-01 | 94.0% | 99.0% |
| 4094662 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.51 | 34.0 | 3.74e-01 | 95.6% | 83.4% |
| 3514061 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.50 | 44.0 | 4.53e-01 | 100.0% | 98.3% |
D2
medium
residues 26-127
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zejB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 4.44e-01 | 77.5% | 83.2% |
| 5swuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 44.0 | 3.35e-01 | 80.4% | 54.2% |
| 1qrsA05 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 39.0 | 3.69e-01 | 71.6% | 57.7% |
| 3kcmF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 35.0 | 3.27e-01 | 99.0% | 48.6% |
| 6feaA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 40.0 | 3.27e-01 | 77.5% | 61.1% |
| 3df7A01 | 3.40.50.11770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 33.0 | 3.44e-01 | 76.5% | 63.3% |
| 4eadA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.53 | 42.0 | 3.35e-01 | 89.2% | 94.3% |
| 1xg8A00 | 3.40.30.30 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Hypothetical protein sa0798. | 0.53 | 29.0 | 2.87e-01 | 76.5% | 49.1% |
| 3hcwA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 3.71e-01 | 85.3% | 96.4% |
| 1vkmA00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.52 | 45.0 | 3.31e-01 | 100.0% | 87.7% |
| 3gffA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.26e-01 | 100.0% | 66.5% |
| 2x7xA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 3.76e-01 | 85.3% | 98.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4387003 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.58 | 51.0 | 3.86e-01 | 99.0% | 49.4% |
| 3669273 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.56 | 39.0 | 3.32e-01 | 71.6% | 62.4% |
| 5001511 | 2002.1.1.44 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase | 0.55 | 44.0 | 3.34e-01 | 88.2% | 49.4% |
| 3201627 | 2003.4.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › THR4_C | 0.53 | 43.0 | 3.18e-01 | 90.2% | 36.2% |
| 4667384 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.53 | 38.0 | 3.44e-01 | 76.5% | 80.0% |
| 4801462 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.53 | 44.0 | 3.44e-01 | 92.2% | 52.6% |
| 4597796 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.52 | 37.0 | 3.34e-01 | 73.5% | 65.5% |
| 119267 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.52 | 36.0 | 3.63e-01 | 71.6% | 92.5% |
| 3410224 | 7516.1.1.37 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN | 0.52 | 42.0 | 3.04e-01 | 90.2% | 70.5% |
| 4972899 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.51 | 41.0 | 3.94e-01 | 88.2% | 99.2% |
| 3286025 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.51 | 41.0 | 3.77e-01 | 90.2% | 73.9% |
| 4613430 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.50 | 45.0 | 3.32e-01 | 100.0% | 67.0% |
| 3732502 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.50 | 43.0 | 3.29e-01 | 100.0% | 68.7% |
| 3954802 | 2004.1.1.90 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobA_CobO_BtuR | 0.50 | 41.0 | 3.37e-01 | 90.2% | 74.4% |