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IMGVR_UViG_2860317346_000001-2860317346-2860319302

Arc-Vir

IMGVR_UViG_2860317346_000001-2860317346-2860319302

Identity

Kingdom:
archaea

Quality

96.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-100
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 72.0 6.35e-01 100.0% 72.5%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 64.0 5.33e-01 98.0% 54.5%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 68.0 5.78e-01 100.0% 65.6%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 4.05e-01 98.0% 70.9%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.55 25.0 2.99e-01 91.9% 61.3%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 31.0 3.24e-01 98.0% 61.8%
2g1lA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 32.0 3.18e-01 70.7% 58.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502270 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.76 64.0 5.30e-01 97.0% 52.4%
3951613 2484.1.1.73 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Rv2179c-like 0.75 69.0 5.75e-01 100.0% 63.6%
3962916 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 69.0 5.89e-01 100.0% 68.6%
3950901 2484.1.1.73 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Rv2179c-like 0.75 69.0 5.68e-01 100.0% 63.5%
4943476 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 54.0 3.94e-01 99.0% 53.1%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 32.0 3.55e-01 80.8% 66.7%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 38.0 3.54e-01 77.8% 55.2%
3238035 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 28.0 3.74e-01 82.8% 94.0%
4411025 284.1.3.3 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.56 36.0 3.99e-01 97.0% 82.5%
3819740 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.53 37.0 3.85e-01 94.9% 77.8%
3726662 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 32.0 3.03e-01 100.0% 51.2%
2859147 7091.1.1.1 ↗ a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.51 34.0 2.97e-01 94.9% 44.7%
3343920 224.1.1.6 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › MPK1_gelsolin_C 0.51 36.0 3.53e-01 75.8% 97.3%
5016201 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.50 38.0 2.68e-01 81.8% 37.1%
D2 high residues 115-168
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 67.0 4.41e-01 100.0% 23.0%
4h08A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.65 56.0 3.81e-01 98.1% 93.5%
3hz6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 51.0 3.36e-01 96.3% 54.7%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.56 41.0 3.15e-01 81.5% 33.9%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.54 46.0 3.54e-01 100.0% 68.7%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.20e-01 94.4% 54.7%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.52 41.0 3.42e-01 87.0% 58.9%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.51 41.0 4.26e-01 88.9% 96.1%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 41.0 3.88e-01 87.0% 74.6%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.50 41.0 3.53e-01 90.7% 56.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3375405 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.70 51.0 3.64e-01 77.8% 34.0%
3615391 3671.1.1.0 ↗ alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain 0.64 57.0 5.21e-01 100.0% 84.3%
4210562 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.61 49.0 4.78e-01 100.0% 78.3%
3270116 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.59 43.0 3.56e-01 77.8% 89.5%
3741826 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.58 40.0 4.04e-01 88.9% 70.9%
4158216 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.58 45.0 4.44e-01 100.0% 78.3%
3726485 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 50.0 2.90e-01 100.0% 62.4%
3803972 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 49.0 4.48e-01 98.1% 88.6%
4401871 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 41.0 4.16e-01 100.0% 80.0%
3495550 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 49.0 3.88e-01 98.1% 62.9%
4640858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.53 41.0 3.68e-01 100.0% 60.0%
4389062 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.53 38.0 3.73e-01 90.7% 70.0%
None — 0.52 41.0 2.67e-01 87.0% 67.6%
4390858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 37.0 3.80e-01 100.0% 88.0%
4645454 1008.1.1.109 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Pex2_Pex12 0.50 40.0 3.38e-01 87.0% 58.9%