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IMGVR_UViG_2868197823_000001-2868197823-2868197953

Arc-Vir

IMGVR_UViG_2868197823_000001-2868197823-2868197953

Identity

Kingdom:
archaea

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-43
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.74 53.0 3.79e-01 100.0% 25.6%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 52.0 3.12e-01 100.0% 10.7%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.73 52.0 3.68e-01 100.0% 24.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 50.0 4.22e-01 100.0% 42.7%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 56.0 4.29e-01 100.0% 49.5%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 55.0 3.17e-01 100.0% 9.3%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 40.0 4.08e-01 97.6% 59.5%
5f47B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 50.0 3.48e-01 100.0% 24.3%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 49.0 3.40e-01 100.0% 22.9%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 50.0 3.34e-01 100.0% 21.0%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 49.0 3.83e-01 100.0% 36.6%
3t9yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 49.0 3.53e-01 100.0% 27.6%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 49.0 3.45e-01 100.0% 25.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 3.52e-01 100.0% 32.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.63 45.0 4.38e-01 100.0% 68.6%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 3.00e-01 100.0% 15.5%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.62 52.0 4.26e-01 100.0% 50.6%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 3.82e-01 100.0% 34.6%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.62 51.0 4.25e-01 100.0% 52.4%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 50.0 4.13e-01 100.0% 70.1%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 41.0 2.66e-01 71.4% 58.3%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 3.41e-01 100.0% 25.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.61 43.0 4.04e-01 100.0% 58.9%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.61 40.0 3.77e-01 78.6% 54.7%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 43.0 3.50e-01 100.0% 36.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.54e-01 100.0% 37.3%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.27e-01 100.0% 25.0%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 39.0 2.85e-01 71.4% 20.7%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.39e-01 100.0% 29.0%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.60 43.0 3.20e-01 100.0% 27.6%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 44.0 4.32e-01 95.2% 72.9%
3vwdA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 49.0 3.23e-01 100.0% 42.3%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.60 45.0 4.58e-01 100.0% 95.1%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.44e-01 100.0% 33.8%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.59 42.0 3.62e-01 100.0% 44.6%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 44.0 2.67e-01 85.7% 52.8%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 50.0 3.74e-01 100.0% 65.2%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 2.95e-01 97.6% 17.4%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 39.0 2.68e-01 100.0% 17.6%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 46.0 3.45e-01 100.0% 33.1%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.56e-01 92.9% 43.5%
7px8A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 2.90e-01 100.0% 27.2%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.51e-01 100.0% 52.8%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.57 43.0 3.06e-01 90.5% 74.2%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 2.92e-01 88.1% 28.2%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.03e-01 90.5% 54.7%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 44.0 2.58e-01 100.0% 47.7%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 36.0 2.73e-01 88.1% 24.3%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 47.0 3.65e-01 100.0% 61.7%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 2.98e-01 90.5% 36.7%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 42.0 3.00e-01 100.0% 26.6%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 39.0 2.73e-01 100.0% 20.3%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.33e-01 100.0% 44.2%
2dawA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 36.0 2.81e-01 100.0% 27.1%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 39.0 2.78e-01 100.0% 22.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018119 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 68.0 3.94e-01 100.0% 12.0%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.78 63.0 5.54e-01 97.6% 61.7%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.76 57.0 4.78e-01 100.0% 46.3%
3206614 706.1.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.75 61.0 5.12e-01 92.9% 91.9%
4002789 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 62.0 4.57e-01 100.0% 38.1%
3940986 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.72 59.0 4.84e-01 97.6% 50.7%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.70 57.0 5.52e-01 100.0% 90.0%
3578584 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.68 54.0 4.12e-01 100.0% 36.4%
4017879 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.68 56.0 4.09e-01 97.6% 40.7%
4156336 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.68 47.0 3.37e-01 100.0% 23.8%
3359021 5.1.5.86 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.67 52.0 3.16e-01 100.0% 12.5%
3701675 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 58.0 4.98e-01 100.0% 66.2%
3251381 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 56.0 4.90e-01 97.6% 66.2%
4839875 1061.1.1.1 a+b two layers › gp120 inner domain › gp120 inner domain › gp120 inner domain › GP120 0.64 42.0 3.82e-01 90.5% 50.0%
3175871 109.2.1.8 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_47 0.63 51.0 2.91e-01 100.0% 18.5%
5004589 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 48.0 3.74e-01 100.0% 35.5%
3764790 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 51.0 4.08e-01 100.0% 49.5%
3628669 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 46.0 4.21e-01 100.0% 58.5%
3567155 220.1.1.115 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.62 45.0 3.11e-01 100.0% 20.6%
3577471 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.62 49.0 3.69e-01 100.0% 37.7%
3606766 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 49.0 3.38e-01 100.0% 22.5%
3997529 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.62 49.0 3.07e-01 100.0% 33.2%
3504735 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 52.0 3.88e-01 100.0% 56.6%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.61 43.0 3.59e-01 100.0% 40.0%
3736088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 3.96e-01 100.0% 40.0%
3222710 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 50.0 4.13e-01 95.2% 53.8%
3997815 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 2.91e-01 100.0% 10.0%
5068106 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 45.0 3.97e-01 100.0% 52.9%
3214382 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 42.0 4.01e-01 100.0% 61.1%
3995204 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.59 45.0 4.09e-01 100.0% 60.0%
4028055 206.1.1.87 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.59 44.0 2.69e-01 100.0% 30.5%
3243957 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 3.16e-01 97.6% 25.0%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 49.0 3.53e-01 100.0% 32.8%
3255739 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 48.0 4.15e-01 97.6% 61.4%
4932366 375.1.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.57 39.0 3.96e-01 100.0% 75.0%
3305439 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 45.0 2.77e-01 100.0% 12.5%
3651019 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.57 44.0 2.83e-01 100.0% 15.3%
4253984 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 44.0 4.49e-01 95.2% 97.5%
4844428 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 42.0 3.83e-01 100.0% 58.7%
4138663 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.56 40.0 3.65e-01 100.0% 52.3%
3719680 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.56 45.0 3.21e-01 97.6% 29.0%
5010892 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.56 42.0 3.16e-01 95.2% 33.3%
3177086 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 44.0 2.52e-01 97.6% 8.3%
3480379 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 42.0 3.33e-01 100.0% 36.2%
4494590 3223.1.1.1 beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.55 44.0 2.53e-01 100.0% 11.2%
3348812 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 43.0 3.14e-01 97.6% 64.8%
3739035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 3.78e-01 100.0% 61.7%
3273875 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.54 45.0 3.48e-01 100.0% 44.8%
3166921 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 44.0 2.65e-01 95.2% 12.8%
3256476 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 3.08e-01 100.0% 91.0%
3931897 69.1.2.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.53 41.0 3.10e-01 100.0% 32.0%
4342479 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.52 38.0 3.36e-01 100.0% 48.8%
3693121 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.52 44.0 3.39e-01 100.0% 38.2%
3641506 3957.1.1.0 a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.52 45.0 3.58e-01 100.0% 50.6%
3575242 1.1.1.14 beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.52 38.0 3.34e-01 97.6% 54.1%
3432877 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.57e-01 97.6% 60.0%
3910914 4111.1.1.3 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.51 37.0 2.66e-01 100.0% 23.0%
3729312 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.50 37.0 2.96e-01 90.5% 70.0%
5031452 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.50 39.0 3.22e-01 100.0% 45.3%
3232995 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 38.0 3.66e-01 95.2% 76.0%