Back to structures

IMGVR_UViG_2868197823_000001-2868197823-2868197960

Arc-Vir

IMGVR_UViG_2868197823_000001-2868197823-2868197960

Identity

Kingdom:
archaea

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
CATH (83)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 70.0 7.39e-01 100.0% 96.5%
2pjpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 68.0 6.99e-01 100.0% 88.3%
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 78.0 6.61e-01 100.0% 68.9%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 77.0 6.95e-01 100.0% 73.3%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 7.17e-01 100.0% 88.1%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 76.0 6.88e-01 96.9% 74.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 67.0 5.75e-01 100.0% 56.8%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 65.0 4.99e-01 100.0% 39.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 66.0 5.02e-01 100.0% 39.1%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 64.0 6.03e-01 100.0% 68.8%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 64.0 6.59e-01 100.0% 88.3%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 4.94e-01 100.0% 38.3%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 72.0 6.44e-01 100.0% 69.3%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 5.06e-01 100.0% 41.5%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 71.0 7.16e-01 100.0% 95.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 65.0 6.10e-01 100.0% 72.4%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 65.0 5.82e-01 100.0% 62.9%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 65.0 6.61e-01 100.0% 90.3%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.80 67.0 4.61e-01 100.0% 28.2%
2rkhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 6.12e-01 100.0% 68.2%
2m45A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 6.25e-01 100.0% 70.1%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 5.94e-01 100.0% 69.1%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 64.0 4.91e-01 100.0% 40.6%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 6.20e-01 100.0% 78.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 70.0 6.01e-01 100.0% 68.9%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 72.0 6.51e-01 100.0% 75.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 72.0 6.87e-01 100.0% 93.2%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 6.30e-01 100.0% 84.6%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 66.0 6.63e-01 100.0% 90.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 72.0 6.78e-01 100.0% 85.3%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 69.0 6.18e-01 100.0% 73.3%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 70.0 5.77e-01 100.0% 60.5%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 6.03e-01 100.0% 70.1%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 6.14e-01 100.0% 81.4%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.38e-01 100.0% 56.6%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 6.19e-01 100.0% 85.1%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 71.0 6.41e-01 100.0% 79.8%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 6.67e-01 100.0% 96.7%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 69.0 5.79e-01 100.0% 70.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 70.0 5.86e-01 100.0% 61.0%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 70.0 6.38e-01 100.0% 78.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 70.0 5.60e-01 100.0% 53.3%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 6.18e-01 100.0% 83.1%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 6.05e-01 100.0% 79.3%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.75 67.0 4.82e-01 100.0% 45.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.31e-01 100.0% 35.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 67.0 5.65e-01 100.0% 63.2%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 67.0 5.77e-01 100.0% 70.4%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 68.0 6.28e-01 100.0% 84.8%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 6.01e-01 100.0% 79.2%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 5.89e-01 100.0% 92.9%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 61.0 5.82e-01 100.0% 80.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 5.55e-01 100.0% 65.0%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 63.0 5.54e-01 100.0% 66.3%
2pmuC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.50e-01 100.0% 65.2%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 65.0 5.51e-01 100.0% 64.1%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.66e-01 100.0% 79.5%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.93e-01 100.0% 88.1%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.81e-01 100.0% 78.6%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.44e-01 100.0% 82.5%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 6.15e-01 100.0% 92.8%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.64e-01 100.0% 81.7%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 65.0 5.84e-01 100.0% 78.8%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.71 63.0 5.50e-01 100.0% 66.7%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.42e-01 100.0% 76.3%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 63.0 5.50e-01 100.0% 70.5%
6do0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.27e-01 100.0% 63.0%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.81e-01 100.0% 84.0%
2ff4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 62.0 5.32e-01 100.0% 70.7%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 61.0 5.69e-01 100.0% 81.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.68 51.0 4.58e-01 87.5% 57.8%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.91e-01 100.0% 97.1%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 60.0 5.59e-01 100.0% 85.0%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.67e-01 100.0% 95.2%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.39e-01 100.0% 84.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.35e-01 100.0% 80.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.42e-01 100.0% 84.1%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.54e-01 100.0% 88.9%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.13e-01 100.0% 82.2%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.71e-01 100.0% 65.9%
2m87A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.72e-01 100.0% 62.1%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.57 49.0 3.39e-01 100.0% 43.1%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.52 39.0 3.94e-01 93.8% 85.5%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4967393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 1.00 97.0 9.30e-01 100.0% 91.4%
3548337 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 81.0 6.73e-01 100.0% 76.2%
5002126 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 72.0 7.58e-01 100.0% 98.3%
3701463 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.86 77.0 6.95e-01 100.0% 72.9%
3713829 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.86 80.0 6.69e-01 100.0% 62.1%
3479827 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 80.0 7.08e-01 100.0% 72.7%
3576823 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.86 80.0 6.18e-01 100.0% 49.6%
3515490 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 78.0 7.35e-01 100.0% 84.0%
3598367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 79.0 6.87e-01 100.0% 68.8%
3497764 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.85 79.0 6.98e-01 100.0% 71.9%
3785070 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.85 79.0 6.57e-01 100.0% 61.5%
3598997 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.85 79.0 7.07e-01 100.0% 75.3%
3550061 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.85 78.0 6.53e-01 100.0% 61.0%
3612970 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.85 79.0 6.70e-01 100.0% 65.3%
3927474 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.84 78.0 6.89e-01 100.0% 71.9%
5035389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 74.0 6.64e-01 100.0% 71.8%
5044592 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.83 69.0 6.73e-01 100.0% 82.9%
3832037 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 77.0 4.89e-01 100.0% 24.6%
5030693 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 75.0 6.27e-01 100.0% 60.0%
2898920 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.83 76.0 5.76e-01 100.0% 61.4%
3741636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 74.0 6.49e-01 100.0% 67.7%
3313321 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.83 76.0 5.50e-01 98.4% 45.6%
4933514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 72.0 5.49e-01 100.0% 43.6%
3444653 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.82 76.0 5.94e-01 100.0% 59.2%
5029304 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.82 67.0 6.86e-01 100.0% 95.0%
3705220 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.81 74.0 6.67e-01 100.0% 75.3%
5047202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 67.0 6.55e-01 100.0% 82.9%
3297411 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.81 74.0 6.49e-01 98.4% 81.1%
3824526 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 74.0 5.69e-01 100.0% 52.6%
2137768 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.81 69.0 4.98e-01 100.0% 34.7%
3426019 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.80 74.0 5.54e-01 100.0% 51.0%
4959768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 7.08e-01 100.0% 100.0%
4982795 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 73.0 7.35e-01 100.0% 98.5%
3738687 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.80 72.0 5.52e-01 100.0% 59.3%
4982553 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.80 71.0 6.03e-01 100.0% 64.8%
3631239 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.80 71.0 5.07e-01 100.0% 53.5%
5031401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 6.40e-01 98.4% 76.2%
4927328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 71.0 6.23e-01 100.0% 70.5%
3662349 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 73.0 5.81e-01 100.0% 67.5%
3441608 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 72.0 6.36e-01 100.0% 82.2%
5037171 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.79 71.0 6.60e-01 100.0% 79.7%
3440716 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.79 72.0 5.60e-01 100.0% 57.7%
4952882 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 70.0 6.46e-01 100.0% 78.8%
3963083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 5.49e-01 100.0% 52.6%
5019697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 6.30e-01 100.0% 71.1%
5044288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 6.53e-01 100.0% 80.0%
3725745 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.78 68.0 5.93e-01 100.0% 65.3%
3206236 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.77 69.0 6.06e-01 100.0% 68.4%
3404553 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 6.78e-01 100.0% 95.4%
4558680 101.1.2.807 alpha arrays › HTH › HTH › winged helix domain › MC6 0.77 67.0 6.16e-01 100.0% 75.0%
5065027 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 69.0 5.28e-01 100.0% 47.6%
3287376 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.76 69.0 4.97e-01 100.0% 37.7%
3587894 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.76 69.0 4.97e-01 100.0% 39.4%
4017936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 66.0 5.84e-01 100.0% 66.3%
4599963 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 68.0 6.20e-01 100.0% 76.5%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 68.0 4.86e-01 100.0% 37.8%
4978596 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 68.0 5.39e-01 100.0% 55.2%
3255111 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.75 67.0 6.67e-01 100.0% 96.9%
5077851 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 68.0 5.10e-01 100.0% 45.3%
3583002 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.75 66.0 6.49e-01 100.0% 92.9%
4927049 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 64.0 5.51e-01 100.0% 61.0%
4978424 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 67.0 5.39e-01 100.0% 56.7%
5049162 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 67.0 4.88e-01 100.0% 38.2%
3618188 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.74 66.0 5.51e-01 100.0% 59.1%
5061722 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 67.0 5.49e-01 100.0% 61.1%
4995459 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 67.0 5.39e-01 100.0% 54.2%
5011050 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 64.0 5.10e-01 100.0% 48.8%
4958945 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 64.0 4.97e-01 100.0% 45.2%
3349777 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 67.0 5.93e-01 100.0% 72.2%
4976186 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 66.0 4.94e-01 100.0% 45.2%
4978533 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 66.0 5.15e-01 100.0% 52.6%
3613393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 6.17e-01 100.0% 80.0%
5080644 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 6.08e-01 100.0% 90.7%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 66.0 4.99e-01 100.0% 43.3%
3217621 101.1.2.265 alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.73 65.0 6.32e-01 100.0% 92.9%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 66.0 5.19e-01 100.0% 50.8%
4994947 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 5.78e-01 100.0% 77.5%
3639822 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.73 65.0 4.59e-01 100.0% 32.7%
4958724 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 66.0 5.56e-01 100.0% 61.0%
4968456 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 6.12e-01 100.0% 86.7%
3587826 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 65.0 5.46e-01 100.0% 63.9%
1175689 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.72 63.0 5.85e-01 100.0% 76.8%
3951258 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 64.0 4.88e-01 100.0% 43.3%
5035685 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 63.0 5.13e-01 100.0% 58.9%
4625648 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 64.0 5.34e-01 100.0% 63.3%
3358560 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.71 63.0 5.99e-01 100.0% 88.0%
4947452 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 4.64e-01 100.0% 38.8%
5029016 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 62.0 4.69e-01 98.4% 44.4%
4983405 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 63.0 4.68e-01 100.0% 39.3%
4260815 101.1.2.375 alpha arrays › HTH › HTH › winged helix domain › MOV-10_N 0.70 62.0 5.78e-01 100.0% 80.0%
4947503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 4.63e-01 100.0% 44.4%
4934352 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 62.0 4.52e-01 100.0% 37.7%
5046626 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 61.0 4.63e-01 100.0% 43.9%
4004538 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.69 62.0 5.41e-01 100.0% 67.4%
5072071 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.78e-01 100.0% 91.4%
5064993 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 58.0 4.78e-01 100.0% 61.7%
3613617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.34e-01 100.0% 87.7%
3898389 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 50.0 4.28e-01 90.6% 60.0%
D2 medium residues 83-182
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF14279.13 best HNH_5 31.8 1.60e-07 57.0% 96.4%
PF01844.30 HNH 39.5 6.90e-10 46.0% 83.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.81 35.0 3.18e-01 84.0% 33.3%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.71 51.0 5.57e-01 77.0% 89.2%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.70 50.0 4.43e-01 74.0% 71.8%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 38.0 5.11e-01 86.0% 100.0%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 36.0 4.75e-01 87.0% 100.0%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 30.0 3.43e-01 77.0% 74.3%
5bylA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 48.0 3.81e-01 99.0% 92.5%
3tdvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 46.0 3.67e-01 96.0% 88.8%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 44.0 2.90e-01 90.0% 83.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.86 51.0 6.32e-01 71.0% 92.3%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 58.0 6.27e-01 93.0% 84.7%
3440476 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.83 57.0 5.36e-01 71.0% 73.1%
3307439 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.83 56.0 5.24e-01 70.0% 71.3%
3317146 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 57.0 5.24e-01 71.0% 70.2%
3870171 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.80 32.0 3.89e-01 84.0% 55.7%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 55.0 6.12e-01 71.0% 96.2%
3590055 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 57.0 5.43e-01 74.0% 84.3%
1144783 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 55.0 4.65e-01 74.0% 46.9%
2485694 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 53.0 4.71e-01 70.0% 54.5%
1684075 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.75 54.0 4.48e-01 74.0% 47.9%
4941657 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.75 54.0 6.24e-01 91.0% 100.0%
185780 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 52.0 5.30e-01 77.0% 76.3%
3952892 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 54.0 4.94e-01 93.0% 62.4%
1291965 378.1.1.16 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.70 53.0 4.17e-01 80.0% 75.0%
3587782 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.68 52.0 5.06e-01 93.0% 72.7%
3948700 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.66 56.0 5.21e-01 90.0% 76.6%
4986026 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.66 57.0 4.52e-01 91.0% 65.4%
4989310 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.65 57.0 4.45e-01 91.0% 64.0%
5080395 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.64 55.0 5.20e-01 90.0% 87.0%
4966182 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.63 58.0 5.35e-01 98.0% 96.8%
4981807 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.62 57.0 4.91e-01 100.0% 79.4%
2991844 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.59 53.0 5.20e-01 97.0% 95.4%
4187709 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.59 55.0 3.53e-01 100.0% 25.7%
5011468 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 47.0 4.33e-01 86.0% 100.0%
2550470 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.57 53.0 4.43e-01 100.0% 65.1%
3270521 109.4.1.139 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin 0.56 52.0 3.57e-01 100.0% 97.6%
4938104 378.1.1.20 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.54 48.0 4.25e-01 96.0% 73.6%
4922670 3820.1.1.6 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC 0.50 38.0 3.18e-01 81.0% 47.3%