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IMGVR_UViG_2868197823_000001-2868197823-2868197964

Arc-Vir

IMGVR_UViG_2868197823_000001-2868197823-2868197964

Identity

Kingdom:
archaea

Quality

60.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-69
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yqgA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.83 47.0 3.89e-01 71.6% 34.5%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.80 48.0 4.07e-01 73.1% 39.8%
1ss3A00 1.10.287.720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 0.72 42.0 4.73e-01 88.1% 78.0%
2zcuA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.71 48.0 3.91e-01 85.1% 40.0%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.64 46.0 4.52e-01 92.5% 69.4%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.64 46.0 4.54e-01 92.5% 70.4%
1cukA03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 41.0 4.93e-01 92.5% 95.8%
3ci0K02 1.10.40.60 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like 0.61 53.0 4.40e-01 94.0% 69.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 4.51e-01 100.0% 81.6%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 45.0 2.87e-01 95.5% 20.6%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.41e-01 71.6% 76.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 39.0 2.93e-01 77.6% 47.6%
5hnmC00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.53 37.0 2.81e-01 74.6% 80.3%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.80e-01 94.0% 65.9%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.53 42.0 3.24e-01 89.6% 48.8%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.52 45.0 3.66e-01 97.0% 68.5%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 38.0 3.29e-01 79.1% 58.2%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 39.0 3.68e-01 94.0% 66.3%
2x9qB00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.51 41.0 2.89e-01 89.6% 56.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3188842 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.83 48.0 3.76e-01 71.6% 31.2%
3286823 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.82 48.0 3.84e-01 71.6% 33.3%
4031352 6026.1.1.43 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 0.69 42.0 3.94e-01 73.1% 50.0%
3505401 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.61 48.0 3.49e-01 89.6% 32.0%
3478717 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.57 38.0 3.23e-01 70.1% 47.0%
3799518 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.56 38.0 3.46e-01 70.1% 96.7%
3964016 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.61e-01 100.0% 94.9%
3810220 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.54 36.0 3.54e-01 70.1% 90.7%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.53 41.0 2.99e-01 89.6% 99.1%
4564202 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.52 45.0 3.08e-01 100.0% 33.7%
D2 medium residues 74-152
PDB