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IMGVR_UViG_2870879507_000001-2870879507-2870883328
Arc-VirIMGVR_UViG_2870879507_000001-2870879507-2870883328
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-146
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02925.22 best | gpD | 270.5 | 3.90e-81 | 97.5% | 82.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tx9A00 | 1.10.1850.10 | Mainly Alpha › Orthogonal Bundle › Procapsid Of Bacteriophage Phix174, Chain 1 › Scaffold protein D | 0.85 | 79.0 | 7.36e-01 | 100.0% | 82.3% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 41.0 | 4.29e-01 | 74.8% | 79.3% |
| 7y3eA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.57 | 46.0 | 3.21e-01 | 86.6% | 78.8% |
| 3obwA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.56 | 36.0 | 3.66e-01 | 97.5% | 65.3% |
| 2g29A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 46.0 | 3.61e-01 | 89.9% | 93.0% |
| 3jysA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 45.0 | 3.68e-01 | 93.3% | 72.3% |
| 1am4A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.52 | 43.0 | 3.68e-01 | 90.8% | 85.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 52423 | 572.1.1.0 ↗ | alpha arrays › Scaffolding protein gpD of bacteriophage procapsid › Scaffolding protein gpD of bacteriophage procapsid › Scaffolding protein gpD of bacteriophage procapsid | 0.86 | 80.0 | 7.57e-01 | 100.0% | 84.1% |
| 480279 | 572.1.1.1 ↗ | alpha arrays › Scaffolding protein gpD of bacteriophage procapsid › Scaffolding protein gpD of bacteriophage procapsid › Scaffolding protein gpD of bacteriophage procapsid › gpD | 0.86 | 73.0 | 6.72e-01 | 87.4% | 71.2% |
| 3661216 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.58 | 40.0 | 3.26e-01 | 83.2% | 37.0% |
| 3808793 | 109.4.1.1334 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long | 0.56 | 34.0 | 3.24e-01 | 86.6% | 49.7% |
| 3814937 | 109.4.1.1280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long | 0.56 | 37.0 | 3.66e-01 | 82.4% | 62.3% |
| 3644261 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.52 | 38.0 | 3.80e-01 | 89.1% | 75.0% |
| 2704751 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.50 | 39.0 | 3.64e-01 | 81.5% | 68.5% |
| 3805983 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.50 | 34.0 | 3.36e-01 | 80.7% | 62.2% |
| 3461383 | 1188.1.1.4 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › OPT | 0.50 | 42.0 | 3.16e-01 | 94.1% | 89.5% |