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IMGVR_UViG_2870879507_000002-2870879507-2870883276

Arc-Vir

IMGVR_UViG_2870879507_000002-2870879507-2870883276

Identity

Kingdom:
archaea

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-47
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.79 51.0 3.46e-01 72.1% 19.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.79 56.0 4.87e-01 76.7% 65.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 57.0 4.92e-01 79.1% 74.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 53.0 4.68e-01 74.4% 68.2%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 51.0 4.86e-01 74.4% 60.8%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.75 51.0 3.43e-01 72.1% 19.6%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.73 53.0 4.54e-01 79.1% 94.3%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.72 49.0 4.69e-01 74.4% 60.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 51.0 4.36e-01 76.7% 58.9%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 57.0 5.91e-01 88.4% 100.0%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 51.0 4.54e-01 88.4% 53.8%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.70 48.0 4.56e-01 74.4% 60.8%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 58.0 3.77e-01 93.0% 39.0%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 52.0 4.46e-01 86.0% 60.3%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 59.0 3.98e-01 100.0% 63.7%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.68 58.0 4.53e-01 100.0% 80.4%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.67 54.0 4.57e-01 90.7% 87.7%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.67 56.0 4.34e-01 95.3% 47.4%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 48.0 3.37e-01 76.7% 79.9%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.40e-01 74.4% 72.0%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 55.0 3.28e-01 97.7% 58.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.20e-01 93.0% 78.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.03e-01 74.4% 59.7%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 3.74e-01 90.7% 68.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.02e-01 74.4% 59.7%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 46.0 3.93e-01 81.4% 46.6%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 46.0 4.15e-01 79.1% 68.3%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.60e-01 100.0% 59.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.05e-01 74.4% 60.3%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 42.0 3.26e-01 72.1% 75.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 47.0 4.28e-01 93.0% 89.4%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.31e-01 100.0% 45.4%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 42.0 3.93e-01 74.4% 67.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 49.0 3.22e-01 95.3% 20.6%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.84e-01 93.0% 60.4%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 48.0 4.01e-01 100.0% 79.1%
1v57A03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 42.0 2.98e-01 74.4% 91.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 41.0 4.03e-01 74.4% 66.7%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 40.0 3.38e-01 72.1% 91.8%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 3.28e-01 93.0% 36.8%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 45.0 3.22e-01 95.3% 65.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.54e-01 74.4% 47.1%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 3.57e-01 95.3% 37.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 3.44e-01 74.4% 48.6%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 2.79e-01 100.0% 35.9%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 3.05e-01 97.7% 80.0%
5d5gA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 43.0 3.27e-01 100.0% 35.8%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 45.0 2.78e-01 97.7% 13.8%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.54 39.0 2.68e-01 81.4% 33.7%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 37.0 2.80e-01 74.4% 87.7%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 2.89e-01 88.4% 51.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265166 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 51.0 4.84e-01 74.4% 58.0%
5032493 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.76 51.0 4.59e-01 86.0% 50.8%
4683204 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.76 53.0 3.99e-01 74.4% 33.3%
4862553 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.75 50.0 3.81e-01 72.1% 30.0%
4970510 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.75 49.0 4.28e-01 86.0% 44.6%
5752 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.75 51.0 3.42e-01 72.1% 19.6%
4987919 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.75 50.0 4.52e-01 86.0% 51.7%
2831878 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.73 47.0 4.34e-01 74.4% 50.0%
3426781 2003.1.2.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.71 47.0 3.11e-01 74.4% 16.2%
5055079 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.70 55.0 4.86e-01 83.7% 66.7%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.69 54.0 4.31e-01 88.4% 50.0%
3722737 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 48.0 3.22e-01 88.4% 19.4%
5009925 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.68 57.0 3.48e-01 100.0% 23.0%
5066751 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.68 53.0 3.12e-01 100.0% 10.9%
4026796 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.68 46.0 3.40e-01 72.1% 77.4%
4037872 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.67 55.0 3.39e-01 93.0% 35.7%
4950628 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.66 52.0 3.20e-01 100.0% 13.9%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 54.0 3.38e-01 95.3% 19.6%
4945660 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.65 45.0 3.17e-01 74.4% 21.3%
3289062 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 46.0 3.66e-01 76.7% 46.7%
4998989 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.65 52.0 3.18e-01 100.0% 14.2%
3722125 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 52.0 3.04e-01 90.7% 31.6%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 54.0 3.04e-01 95.3% 9.0%
5075769 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.65 49.0 4.30e-01 83.7% 61.5%
4982571 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 48.0 4.43e-01 83.7% 69.0%
5058747 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 49.0 4.47e-01 83.7% 69.0%
4939428 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 49.0 4.40e-01 83.7% 65.0%
4119657 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.63 53.0 3.24e-01 100.0% 15.2%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 4.78e-01 97.7% 89.7%
4863267 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.62 43.0 3.75e-01 74.4% 93.1%
3169639 5.1.4.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.62 52.0 3.07e-01 100.0% 87.8%
3584571 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.62 43.0 2.75e-01 74.4% 14.5%
5077594 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 46.0 4.34e-01 83.7% 72.7%
2756600 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.61 42.0 3.71e-01 76.7% 91.8%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 42.0 3.79e-01 74.4% 52.3%
5052895 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 3.96e-01 93.0% 60.0%
3508175 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.59 45.0 4.40e-01 88.4% 88.0%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 41.0 3.64e-01 88.4% 47.1%
3510862 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.58 48.0 2.85e-01 100.0% 18.6%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.52e-01 74.4% 45.7%
1952792 7569.1.1.1 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.57 46.0 2.96e-01 95.3% 56.8%
4398495 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.57 46.0 2.58e-01 100.0% 15.3%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.56 46.0 2.55e-01 100.0% 15.8%
4014861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.81e-01 95.3% 20.8%
3648305 809.2.1.7 a+b two layers › BLIP-like › BT0923-like › BT0923-like › Beta-prop_IP5PC_F 0.55 45.0 3.66e-01 100.0% 67.4%
3987436 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.55 45.0 2.60e-01 95.3% 43.3%
3226306 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.05e-01 83.7% 44.3%
4792845 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 2.92e-01 95.3% 21.1%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.55 38.0 3.06e-01 95.3% 31.1%
3326491 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.53e-01 74.4% 52.8%
3465146 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 41.0 2.34e-01 95.3% 12.6%
5009920 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.52 41.0 2.56e-01 100.0% 14.9%
418524 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 40.0 2.57e-01 100.0% 16.4%
4816901 5098.1.1.1 a+b two layers › beta-grasp domain in anthrax protective antigen › beta-grasp domain in anthrax protective antigen › beta-grasp domain in anthrax protective antigen › Binary_toxB_3 0.51 41.0 3.58e-01 90.7% 80.0%