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IMGVR_UViG_2870879507_000003-2870879507-2870881481

Arc-Vir

IMGVR_UViG_2870879507_000003-2870879507-2870881481

Identity

Kingdom:
archaea

Quality

69.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 68.0 6.17e-01 90.7% 84.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 6.12e-01 96.3% 75.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 65.0 6.18e-01 90.7% 87.1%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 51.0 4.76e-01 100.0% 56.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 5.45e-01 87.0% 66.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 5.47e-01 87.0% 67.6%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.75 61.0 5.12e-01 92.6% 81.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.34e-01 96.3% 71.7%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 49.0 4.40e-01 100.0% 50.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 59.0 4.79e-01 92.6% 54.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.81e-01 92.6% 82.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 49.0 4.63e-01 100.0% 59.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.72 56.0 5.39e-01 85.2% 85.7%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.82e-01 90.7% 86.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 47.0 4.41e-01 100.0% 56.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.16e-01 77.8% 55.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 47.0 4.39e-01 100.0% 56.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.53e-01 94.4% 85.7%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.45e-01 98.1% 82.4%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 3.66e-01 92.6% 58.6%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 49.0 3.27e-01 94.4% 36.2%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 47.0 3.02e-01 87.0% 27.8%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 46.0 4.56e-01 85.2% 78.9%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.61 52.0 3.87e-01 100.0% 53.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.20e-01 96.3% 65.7%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 3.84e-01 90.7% 45.2%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 41.0 4.22e-01 75.9% 90.2%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 47.0 3.73e-01 88.9% 47.7%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 43.0 2.82e-01 88.9% 30.5%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 45.0 3.50e-01 96.3% 54.7%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.57 48.0 3.87e-01 100.0% 55.9%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.56 44.0 3.29e-01 90.7% 32.4%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 41.0 4.28e-01 92.6% 89.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.05e-01 100.0% 64.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.34e-01 85.2% 39.8%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.84e-01 100.0% 72.8%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.73e-01 100.0% 58.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.97e-01 100.0% 75.9%
1qqhA00 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.54 38.0 2.94e-01 77.8% 52.8%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 2.81e-01 92.6% 37.4%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 44.0 3.55e-01 94.4% 69.3%
3e7wA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 44.0 2.64e-01 92.6% 77.8%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 42.0 3.49e-01 100.0% 52.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.89e-01 100.0% 70.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.52e-01 96.3% 68.9%
2hgaA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 44.0 3.81e-01 98.1% 67.1%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 37.0 3.82e-01 81.5% 90.2%
1f53A00 2.60.20.30 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.50 32.0 2.86e-01 96.3% 40.5%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 41.0 2.80e-01 90.7% 62.6%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 35.0 3.62e-01 81.5% 90.4%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3736329 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.81 67.0 4.58e-01 90.7% 35.0%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 62.0 6.17e-01 83.3% 81.8%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.32e-01 87.0% 87.3%
3687369 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.78 66.0 5.38e-01 94.4% 72.0%
3707121 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 64.0 5.75e-01 90.7% 90.7%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.78 64.0 5.40e-01 90.7% 67.8%
3190995 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.78 64.0 4.48e-01 92.6% 40.6%
4012953 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 63.0 4.59e-01 90.7% 44.0%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 68.0 4.81e-01 96.3% 58.1%
5054112 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 65.0 6.09e-01 92.6% 96.9%
3496126 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.77 66.0 5.57e-01 94.4% 78.4%
3730835 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 64.0 5.26e-01 90.7% 58.9%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 67.0 5.59e-01 96.3% 61.1%
3256053 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 64.0 5.40e-01 92.6% 63.3%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.30e-01 94.4% 81.0%
4018672 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.76 63.0 4.95e-01 92.6% 59.1%
3935716 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 65.0 5.84e-01 94.4% 76.0%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.86e-01 92.6% 74.3%
3624304 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 64.0 5.24e-01 92.6% 84.2%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.75 64.0 5.80e-01 96.3% 80.0%
3302166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 63.0 5.93e-01 92.6% 84.6%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 5.72e-01 90.7% 72.9%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.75 65.0 4.57e-01 96.3% 56.9%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 63.0 5.90e-01 92.6% 84.6%
3486271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.41e-01 96.3% 57.8%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 64.0 5.40e-01 96.3% 58.9%
3219409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.19e-01 92.6% 83.3%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.81e-01 96.3% 78.6%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.72 57.0 5.63e-01 87.0% 87.9%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.17e-01 96.3% 66.7%
4020096 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 58.0 4.38e-01 94.4% 50.0%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.70 46.0 4.28e-01 100.0% 52.9%
3824811 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.69 59.0 4.27e-01 96.3% 49.7%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.83e-01 96.3% 60.0%
3639196 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.69 51.0 5.27e-01 92.6% 87.8%
1821014 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.68 53.0 5.03e-01 87.0% 87.5%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 45.0 4.22e-01 100.0% 55.9%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 54.0 3.40e-01 88.9% 21.1%
4929725 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.67 48.0 5.17e-01 87.0% 93.3%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.67 57.0 5.02e-01 96.3% 75.0%
3263687 5.1.4.276 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.66 53.0 3.26e-01 88.9% 18.5%
3932539 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.29e-01 88.9% 17.6%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.73e-01 88.9% 70.8%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 52.0 4.47e-01 88.9% 92.9%
3471318 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.63e-01 100.0% 67.0%
4030767 3504.1.1.1 beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 0.64 49.0 3.99e-01 90.7% 82.5%
3519934 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.64 50.0 3.30e-01 87.0% 23.5%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.63 50.0 2.98e-01 87.0% 13.7%
3556811 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.63 42.0 4.31e-01 90.7% 74.0%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 49.0 4.67e-01 88.9% 81.5%
4014854 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 48.0 2.97e-01 85.2% 25.2%
5047619 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 54.0 4.05e-01 98.1% 89.2%
3939142 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.61 45.0 2.77e-01 85.2% 13.5%
3685243 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 51.0 3.28e-01 98.1% 50.4%
4336845 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 42.0 4.12e-01 79.6% 80.0%
4013660 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 50.0 2.97e-01 98.1% 23.5%
3269447 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 42.0 2.80e-01 88.9% 68.8%
3657897 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 44.0 4.31e-01 87.0% 93.3%
3486425 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.55 41.0 2.93e-01 88.9% 73.0%
3361883 1205.2.1.1 a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.54 45.0 3.82e-01 98.1% 91.6%
5013328 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 46.0 4.53e-01 100.0% 90.0%
4098704 4167.1.1.1 beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.53 39.0 3.06e-01 87.0% 40.0%
4456205 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 39.0 3.89e-01 83.3% 90.9%
5078875 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.52 42.0 2.63e-01 90.7% 26.6%
3328685 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 41.0 3.95e-01 96.3% 84.6%
3507374 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.51 36.0 3.25e-01 87.0% 52.5%
3437430 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 37.0 3.58e-01 83.3% 75.4%
3994731 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 42.0 3.02e-01 98.1% 52.2%
3987332 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 37.0 3.71e-01 83.3% 89.1%
3642858 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.50 41.0 2.71e-01 98.1% 35.7%
5041849 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.50 35.0 3.58e-01 81.5% 87.3%
5028909 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 40.0 2.35e-01 90.7% 50.4%