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IMGVR_UViG_2875952388_000001-2875952388-2875952421

Arc-Vir

IMGVR_UViG_2875952388_000001-2875952388-2875952421

Identity

Kingdom:
archaea

Quality

86.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-38
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a2vD02 3.30.1020.10 Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 0.71 56.0 4.26e-01 100.0% 35.8%
1u60A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.68 49.0 2.88e-01 80.0% 98.7%
3nytA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 52.0 3.71e-01 97.1% 92.2%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 49.0 3.17e-01 91.4% 40.2%
7f0uA01 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.56 48.0 3.56e-01 100.0% 71.6%
5kzwA01 4.10.110.10 Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Spasmolytic Protein, domain 1 0.55 37.0 3.61e-01 82.9% 56.8%
1ldjA06 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.52e-01 97.1% 97.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276581 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.64 52.0 3.05e-01 94.3% 70.5%
4001812 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 2.90e-01 88.6% 57.1%
D2 high residues 53-99
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.73 54.0 4.63e-01 83.0% 76.2%
1knzA02 3.30.70.1610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 43.0 4.17e-01 76.6% 57.7%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 51.0 4.25e-01 89.4% 98.9%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 51.0 3.68e-01 100.0% 53.8%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.62 48.0 2.95e-01 97.9% 73.9%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 49.0 3.80e-01 100.0% 52.5%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.59 49.0 3.68e-01 100.0% 75.4%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 44.0 2.61e-01 85.1% 69.7%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 3.59e-01 87.2% 50.0%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.57 49.0 3.59e-01 100.0% 60.0%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 42.0 2.83e-01 85.1% 44.0%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.56 50.0 3.64e-01 100.0% 62.3%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.26e-01 83.0% 41.0%
3mcpA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 2.99e-01 100.0% 27.4%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.55 46.0 3.73e-01 100.0% 73.3%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.24e-01 93.6% 41.7%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.64e-01 93.6% 69.0%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.46e-01 91.5% 54.0%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 37.0 3.30e-01 76.6% 45.1%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 2.96e-01 100.0% 46.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.42e-01 93.6% 50.5%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.54 39.0 3.27e-01 83.0% 57.6%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.53 39.0 3.38e-01 80.9% 78.9%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.20e-01 100.0% 59.3%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 2.74e-01 80.9% 25.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 37.0 3.58e-01 85.1% 66.7%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 38.0 2.77e-01 100.0% 27.0%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.51 42.0 2.84e-01 100.0% 61.3%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 2.83e-01 74.5% 62.4%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 34.0 2.70e-01 72.3% 39.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 2.99e-01 83.0% 40.8%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.25e-01 100.0% 48.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.68e-01 100.0% 88.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.44e-01 93.6% 69.8%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 2.67e-01 97.9% 27.6%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 36.0 2.35e-01 80.9% 54.2%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.01e-01 97.9% 38.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946846 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.69 51.0 3.57e-01 83.0% 24.2%
3652799 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.65 46.0 3.76e-01 83.0% 36.9%
5010022 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.64 45.0 3.66e-01 74.5% 45.9%
5065439 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.63 42.0 2.93e-01 70.2% 68.5%
6892 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.63 46.0 4.91e-01 95.7% 100.0%
3380612 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.62 49.0 3.59e-01 97.9% 30.7%
3296404 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.62 48.0 4.76e-01 89.4% 84.0%
1207585 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.62 43.0 3.58e-01 72.3% 59.3%
3898373 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.61 46.0 2.88e-01 83.0% 78.9%
5075945 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 41.0 3.66e-01 72.3% 47.1%
3993677 823.1.1.0 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.60 44.0 3.95e-01 80.9% 64.3%
4446761 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.59 40.0 3.86e-01 93.6% 61.8%
3364232 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.58 49.0 4.11e-01 97.9% 67.1%
4141047 593.1.1.0 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.57 46.0 2.98e-01 93.6% 60.0%
3204533 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 40.0 3.64e-01 80.9% 50.7%
4940345 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 45.0 3.33e-01 91.5% 49.6%
3822937 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.57 48.0 4.50e-01 100.0% 80.0%
147013 3227.1.1.1 alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.57 46.0 2.75e-01 97.9% 36.1%
3603400 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.56 40.0 3.43e-01 91.5% 46.7%
3932516 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.56 48.0 2.96e-01 100.0% 64.0%
5045697 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.56 40.0 3.04e-01 74.5% 33.3%
3882804 263.1.1.4 a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.56 44.0 4.13e-01 95.7% 70.3%
4012962 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.03e-01 97.9% 39.1%
3533151 11.1.1.563 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERB_1st 0.56 41.0 3.44e-01 83.0% 76.7%
3479024 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.56 41.0 3.96e-01 91.5% 70.9%
3759086 3016.1.1.21 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.56 37.0 2.66e-01 70.2% 22.1%
3818705 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 47.0 4.02e-01 100.0% 60.0%
169108 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 42.0 3.26e-01 83.0% 41.0%
4992385 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.55 40.0 3.47e-01 93.6% 51.4%
4978228 305.2.1.0 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.55 38.0 3.38e-01 93.6% 52.3%
4083451 192.2.1.20 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.55 39.0 3.28e-01 76.6% 87.5%
3440722 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.55 45.0 3.33e-01 100.0% 34.5%
5058130 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.55 42.0 3.63e-01 85.1% 72.0%
4009409 109.4.1.2353 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N, TPR_2 0.55 45.0 2.70e-01 100.0% 12.8%
5077595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.51e-01 100.0% 63.6%
3204719 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.54 43.0 3.10e-01 89.4% 40.0%
5040556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.06e-01 83.0% 35.8%
3315481 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 44.0 3.49e-01 100.0% 44.3%
3428560 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 44.0 4.28e-01 100.0% 90.9%
3299168 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 45.0 3.89e-01 100.0% 61.3%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.54 45.0 3.21e-01 100.0% 59.4%
3415024 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 44.0 2.74e-01 95.7% 61.3%
3381554 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 44.0 3.85e-01 100.0% 61.3%
3498910 109.4.1.159 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ELMO_ARM 0.53 44.0 2.76e-01 100.0% 16.7%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.65e-01 100.0% 85.6%
2409292 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 3.30e-01 91.5% 62.5%
3183587 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.53 43.0 2.89e-01 100.0% 24.9%
3240249 7581.1.1.23 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ACP_syn_III 0.52 42.0 2.74e-01 95.7% 20.4%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.75e-01 100.0% 72.6%
3174487 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.52 42.0 2.60e-01 100.0% 53.2%
4197044 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.51 36.0 3.62e-01 83.0% 76.0%
3587554 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 38.0 3.09e-01 85.1% 43.0%
1146763 101.1.2.72 alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN 0.50 42.0 3.68e-01 100.0% 88.3%
5072012 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.50 44.0 3.56e-01 100.0% 73.3%
4983387 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.15e-01 93.6% 53.0%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 38.0 2.44e-01 83.0% 65.6%