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IMGVR_UViG_2883595994_000001-2883595994-2883597007

Arc-Vir

IMGVR_UViG_2883595994_000001-2883595994-2883597007

Identity

Kingdom:
archaea

Quality

68.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bf5A02 2.20.150.10 Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase 0.68 43.0 4.56e-01 100.0% 76.7%
4mt5A02 2.60.40.4300 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 54.0 4.38e-01 100.0% 80.4%
3i57A01 3.10.20.470 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 55.0 4.92e-01 100.0% 93.3%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.63 52.0 4.60e-01 100.0% 96.5%
5ffiE00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.59 50.0 4.14e-01 100.0% 99.0%
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 3.87e-01 100.0% 80.4%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.74e-01 88.5% 21.5%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 3.81e-01 100.0% 96.9%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 44.0 3.82e-01 100.0% 84.6%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 2.80e-01 100.0% 31.9%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.38e-01 100.0% 69.5%
5yl6A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.53 38.0 2.85e-01 84.6% 93.2%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.88e-01 100.0% 98.8%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.48e-01 100.0% 80.3%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 45.0 4.25e-01 100.0% 83.1%
1wxqA03 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 44.0 4.05e-01 100.0% 94.4%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.47e-01 98.1% 70.5%
3ig3A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 41.0 3.45e-01 98.1% 86.6%
2fazA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.91e-01 100.0% 92.2%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 40.0 3.25e-01 92.3% 95.0%
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.60e-01 100.0% 86.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671155 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 54.0 4.86e-01 100.0% 91.0%
4451235 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 41.0 2.69e-01 76.9% 83.4%
3487190 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 4.15e-01 100.0% 93.7%
3707940 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 3.92e-01 100.0% 89.0%
3205796 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 3.72e-01 100.0% 67.5%
3595012 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 3.76e-01 100.0% 91.3%
3217314 221.1.1.92 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SL4P 0.54 42.0 3.87e-01 100.0% 97.5%
3717403 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 38.0 2.42e-01 80.8% 56.9%
5048100 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 40.0 2.64e-01 86.5% 45.1%
3794227 3156.1.1.18 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › CLPTM1 0.52 39.0 2.79e-01 92.3% 63.8%
5025359 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.51 38.0 2.50e-01 86.5% 25.5%
5012900 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.51 38.0 2.55e-01 86.5% 27.9%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.50 38.0 2.47e-01 86.5% 25.6%
5080678 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.50 38.0 3.81e-01 90.4% 87.3%
3180766 244.1.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.50 38.0 3.05e-01 90.4% 72.0%