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IMGVR_UViG_2904983472_000001-2904983472-2904987684

Arc-Vir

IMGVR_UViG_2904983472_000001-2904983472-2904987684

Identity

Kingdom:
archaea

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-120
PDB
Domain cluster: rep: NC_021327__YP_008059082.1__M200-gp040__00040__D12-93
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 5.02e-01 88.2% 97.4%
4htfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 43.0 3.23e-01 70.6% 53.3%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.33e-01 75.5% 78.8%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.61 41.0 4.70e-01 71.6% 100.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 4.20e-01 71.6% 82.1%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 4.27e-01 71.6% 89.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.33e-01 72.5% 85.7%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 4.09e-01 77.5% 75.5%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 4.16e-01 71.6% 86.4%
3dkwG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.28e-01 75.5% 90.1%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.25e-01 73.5% 89.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 4.04e-01 71.6% 87.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025104 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.67 45.0 5.02e-01 74.5% 87.5%
3208249 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.65 45.0 4.60e-01 81.4% 73.0%
3343138 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 4.72e-01 78.4% 92.0%
4973726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.21e-01 73.5% 63.5%
3613028 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.62 48.0 4.65e-01 83.3% 76.5%
4645741 101.1.2.59 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF480 0.62 44.0 3.50e-01 74.5% 39.0%
5079941 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 4.66e-01 75.5% 94.7%
3557944 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.61 41.0 4.63e-01 74.5% 94.7%
5067817 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 3.93e-01 77.5% 60.9%
3254058 101.1.2.151 ↗ alpha arrays › HTH › HTH › winged helix domain › COR 0.60 42.0 4.57e-01 76.5% 88.2%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.60 40.0 4.29e-01 78.4% 81.2%
4942158 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.59 38.0 4.45e-01 73.5% 100.0%
3957409 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 38.0 3.89e-01 75.5% 67.0%
5047052 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.58 41.0 3.58e-01 80.4% 45.2%
4954533 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 4.35e-01 78.4% 85.9%
3932294 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.63e-01 77.5% 98.8%
5061098 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.58 37.0 4.22e-01 71.6% 94.3%
3409047 101.1.2.219 ↗ alpha arrays › HTH › HTH › winged helix domain › Dark_WHD 0.58 38.0 4.05e-01 75.5% 78.8%
4987205 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 40.0 4.29e-01 77.5% 87.1%
4157393 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 41.0 2.77e-01 82.4% 18.8%
5059033 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 43.0 4.33e-01 81.4% 83.8%
None — 0.57 38.0 4.03e-01 76.5% 77.8%
None — 0.57 38.0 3.99e-01 75.5% 76.7%
5052686 2003.1.5.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.56 46.0 3.23e-01 88.2% 92.3%
3464717 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 45.0 3.12e-01 84.3% 91.1%
4992977 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.56 38.0 3.64e-01 76.5% 59.2%
None — 0.55 38.0 3.89e-01 79.4% 74.7%
4992707 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.51e-01 75.5% 52.1%
5046545 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.34e-01 70.6% 49.3%
5022242 2003.1.5.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.52 41.0 2.96e-01 85.3% 100.0%
5028561 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 35.0 3.45e-01 78.4% 65.5%
D2 medium residues 121-216
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 55.0 5.45e-01 100.0% 99.0%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 53.0 5.16e-01 99.0% 94.5%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 51.0 4.98e-01 99.0% 96.3%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 4.12e-01 100.0% 65.5%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.91e-01 95.8% 53.3%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 50.0 4.85e-01 99.0% 96.3%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 50.0 4.81e-01 97.9% 98.2%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.56 39.0 3.72e-01 80.2% 60.0%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 47.0 4.66e-01 94.8% 94.2%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 3.79e-01 96.9% 71.9%
2rccA01 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.55 45.0 3.37e-01 90.6% 80.7%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 3.49e-01 77.1% 74.8%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 41.0 3.69e-01 85.4% 61.8%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.68e-01 89.6% 60.5%
2qyoA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.20e-01 92.7% 38.2%
6jdbA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.80e-01 96.9% 66.0%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 38.0 3.47e-01 84.4% 57.9%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.50 36.0 3.31e-01 76.0% 56.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976759 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 58.0 5.79e-01 99.0% 99.0%
4004617 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 57.0 5.40e-01 99.0% 90.4%
3283340 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 57.0 5.48e-01 99.0% 90.0%
3972412 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 56.0 5.43e-01 99.0% 93.6%
4541688 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 56.0 5.34e-01 100.0% 97.4%
3287303 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 54.0 5.32e-01 96.9% 99.0%
4010677 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 54.0 5.38e-01 99.0% 99.0%
None — 0.63 54.0 5.35e-01 96.9% 96.0%
383331 101.31.1.1 ↗ alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase 0.61 52.0 4.71e-01 94.8% 76.2%
3283959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 49.0 5.04e-01 93.8% 98.9%
3664497 605.3.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain › RWP-RK 0.57 49.0 4.73e-01 93.8% 93.6%
3423806 101.1.1.196 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.57 50.0 4.74e-01 96.9% 88.7%
3323356 632.7.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › RWP-RK 0.55 48.0 4.56e-01 96.9% 89.6%
4008825 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.54 41.0 3.26e-01 81.2% 49.0%
4977102 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.53 43.0 3.95e-01 87.5% 94.4%
3165978 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.53 42.0 3.50e-01 84.4% 59.4%
4998720 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 41.0 3.01e-01 85.4% 65.2%