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IMGVR_UViG_2904991991_000001-2904991991-2904995964
Arc-VirIMGVR_UViG_2904991991_000001-2904991991-2904995964
Identity
- Kingdom:
- archaea
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-68
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.79 | 56.0 | 5.25e-01 | 73.8% | 64.4% |
| 5hb0D01 | 1.20.120.1880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain | 0.79 | 57.0 | 3.67e-01 | 75.4% | 35.1% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.76 | 55.0 | 4.89e-01 | 77.0% | 66.3% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.70 | 63.0 | 5.19e-01 | 96.7% | 96.1% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.70 | 48.0 | 4.24e-01 | 75.4% | 50.0% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 46.0 | 3.56e-01 | 72.1% | 96.2% |
| 6muwM00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 46.0 | 3.15e-01 | 73.8% | 32.9% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 46.0 | 3.22e-01 | 73.8% | 36.4% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 47.0 | 3.25e-01 | 75.4% | 37.7% |
| 1rypL00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 46.0 | 3.18e-01 | 73.8% | 35.4% |
| 3er9B01 | 1.20.1270.320 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain | 0.65 | 51.0 | 4.35e-01 | 91.8% | 50.9% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.65 | 56.0 | 4.86e-01 | 100.0% | 95.9% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 46.0 | 3.23e-01 | 75.4% | 39.9% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 44.0 | 4.20e-01 | 73.8% | 68.0% |
| 3cmnA01 | 1.20.150.30 | Mainly Alpha › Up-down Bundle › Lysin › Zincin-like metallopeptidase, N-terminal domain | 0.64 | 52.0 | 4.27e-01 | 91.8% | 70.9% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 56.0 | 4.18e-01 | 96.7% | 73.6% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 41.0 | 4.26e-01 | 72.1% | 84.2% |
| 5fmgF00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 42.0 | 2.98e-01 | 75.4% | 34.7% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.60 | 45.0 | 4.50e-01 | 96.7% | 79.7% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 49.0 | 3.92e-01 | 100.0% | 44.8% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 39.0 | 3.68e-01 | 90.2% | 61.3% |
| 2g7lA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 3.07e-01 | 91.8% | 84.1% |
| 3s4lA00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.52 | 44.0 | 3.18e-01 | 100.0% | 54.8% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.25e-01 | 86.9% | 56.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045083 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.83 | 58.0 | 4.04e-01 | 73.8% | 27.9% |
| 3512559 | 192.1.1.37 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 | 0.81 | 55.0 | 5.44e-01 | 70.5% | 90.8% |
| 4024241 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.77 | 56.0 | 5.14e-01 | 77.0% | 62.8% |
| 2075033 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.74 | 52.0 | 4.77e-01 | 73.8% | 59.5% |
| 3962576 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.74 | 52.0 | 4.74e-01 | 75.4% | 63.9% |
| 3608416 | 4336.2.1.0 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 | 0.73 | 51.0 | 4.52e-01 | 72.1% | 61.2% |
| 3351474 | 7010.1.1.0 ↗ | alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator | 0.70 | 51.0 | 5.03e-01 | 86.9% | 72.3% |
| 2833148 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.70 | 48.0 | 3.91e-01 | 72.1% | 39.1% |
| 2979523 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 48.0 | 4.60e-01 | 91.8% | 61.1% |
| 3799213 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 58.0 | 4.34e-01 | 95.1% | 86.7% |
| 3685493 | 605.2.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › DUF7785 | 0.67 | 48.0 | 4.25e-01 | 75.4% | 78.8% |
| 3481731 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.66 | 58.0 | 5.02e-01 | 100.0% | 94.7% |
| 3651775 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.66 | 59.0 | 4.70e-01 | 100.0% | 77.5% |
| 3363158 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 45.0 | 3.94e-01 | 72.1% | 53.3% |
| 4948292 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.63 | 45.0 | 3.29e-01 | 91.8% | 25.7% |
| 4013711 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.63 | 56.0 | 4.76e-01 | 100.0% | 79.0% |
| 972045 | 148.1.1.18 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-S | 0.62 | 55.0 | 5.07e-01 | 100.0% | 96.2% |
| 4024734 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 53.0 | 3.82e-01 | 95.1% | 62.4% |
| 4678175 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.61 | 52.0 | 3.04e-01 | 100.0% | 50.6% |
| 3619546 | 3712.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 | 0.61 | 41.0 | 4.12e-01 | 72.1% | 90.8% |
| 4941755 | 101.18.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of TraM protein › DNA-binding domain of TraM protein | 0.60 | 41.0 | 3.78e-01 | 91.8% | 52.9% |
| 3945879 | 101.38.1.4 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 | 0.59 | 50.0 | 4.18e-01 | 96.7% | 60.0% |
| 3973613 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.58 | 44.0 | 3.75e-01 | 80.3% | 64.2% |
| 4995367 | 129.1.1.11 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C | 0.57 | 49.0 | 3.98e-01 | 100.0% | 76.8% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.57 | 42.0 | 4.40e-01 | 96.7% | 90.9% |
| 52297 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 47.0 | 4.21e-01 | 95.1% | 100.0% |
| 3202914 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.56 | 38.0 | 3.84e-01 | 70.5% | 75.0% |
| 3970548 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 45.0 | 3.96e-01 | 90.2% | 88.9% |
| 3368926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 36.0 | 3.56e-01 | 86.9% | 64.6% |
| 3724838 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.53 | 47.0 | 4.50e-01 | 96.7% | 94.3% |
| 4628667 | 605.4.1.13 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PANTS-like | 0.52 | 41.0 | 4.06e-01 | 90.2% | 86.2% |