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IMGVR_UViG_2904991991_000001-2904991991-2904995967

Arc-Vir

IMGVR_UViG_2904991991_000001-2904991991-2904995967

Identity

Kingdom:
archaea

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 5.53e-01 73.1% 96.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 57.0 5.25e-01 80.8% 95.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.09e-01 76.9% 90.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.17e-01 80.8% 68.2%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 4.47e-01 71.2% 89.3%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.74 50.0 5.37e-01 75.0% 92.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.33e-01 76.9% 94.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 4.68e-01 75.0% 66.7%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 5.38e-01 76.9% 95.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.68 48.0 4.49e-01 75.0% 77.3%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.79e-01 100.0% 70.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.43e-01 82.7% 65.8%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 46.0 3.39e-01 78.8% 83.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 47.0 4.70e-01 86.5% 94.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.22e-01 76.9% 100.0%
2fi9A00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.56 40.0 3.21e-01 78.8% 90.7%
8ajqA01 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.53 36.0 2.92e-01 71.2% 75.7%
5axgA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 38.0 2.43e-01 88.5% 89.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 58.0 5.57e-01 71.2% 79.3%
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 55.0 5.90e-01 71.2% 86.7%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.81 56.0 5.39e-01 73.1% 70.0%
3781711 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.81 56.0 5.54e-01 73.1% 76.4%
3700745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 55.0 5.61e-01 71.2% 88.0%
5054668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 54.0 5.80e-01 76.9% 84.4%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.77 55.0 5.17e-01 76.9% 67.7%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 6.09e-01 90.4% 96.4%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.75 56.0 5.19e-01 80.8% 69.2%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.20e-01 78.8% 83.6%
4963650 4.1.1.488 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7346 0.70 59.0 5.86e-01 96.2% 98.2%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 55.0 3.10e-01 88.5% 9.4%
3761440 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.11e-01 80.8% 80.0%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.95e-01 76.9% 86.0%
3656232 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.68 46.0 4.85e-01 71.2% 88.9%
5011007 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.66 49.0 4.39e-01 80.8% 67.6%
3302832 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 47.0 3.27e-01 76.9% 87.6%
4999072 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 46.0 3.47e-01 76.9% 70.8%
3316380 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.63 47.0 3.55e-01 78.8% 68.0%
3429455 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.62 50.0 3.04e-01 90.4% 26.9%
3283520 2003.1.2.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.61 43.0 2.66e-01 75.0% 30.6%
4610504 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.61 41.0 2.43e-01 76.9% 9.2%
3733052 7538.1.1.1 ↗ a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 0.59 42.0 3.26e-01 76.9% 91.2%
5037106 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 40.0 2.64e-01 76.9% 73.3%
185920 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.53 40.0 2.76e-01 78.8% 55.5%
11196 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.52 37.0 2.61e-01 80.8% 49.8%
D2 high residues 64-122
PDB
Domain cluster: rep: IMGVR_UViG_2904983472_000001-2904983472-2904987649__D54-111