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IMGVR_UViG_2904991991_000001-2904991991-2904995975

Arc-Vir

IMGVR_UViG_2904991991_000001-2904991991-2904995975

Identity

Kingdom:
archaea

Quality

85.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-48
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.76 53.0 3.84e-01 73.8% 40.7%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.75 58.0 5.33e-01 85.7% 72.7%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.75 52.0 3.73e-01 73.8% 32.2%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.74 54.0 4.71e-01 88.1% 52.4%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.72 57.0 4.97e-01 88.1% 59.4%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 57.0 4.52e-01 100.0% 49.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.25e-01 73.8% 78.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.12e-01 73.8% 76.2%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 47.0 3.30e-01 76.2% 36.3%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 45.0 3.73e-01 73.8% 73.2%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 47.0 4.47e-01 85.7% 67.3%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.63 46.0 2.66e-01 88.1% 9.7%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 44.0 3.54e-01 88.1% 72.9%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 40.0 3.33e-01 73.8% 64.0%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 39.0 2.42e-01 73.8% 11.9%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 43.0 3.59e-01 88.1% 86.7%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 2.55e-01 73.8% 16.1%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 45.0 3.35e-01 97.6% 80.8%
6f95A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 41.0 2.96e-01 88.1% 85.8%
4oifA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 42.0 2.68e-01 88.1% 59.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.42e-01 90.5% 88.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013172 375.1.5.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.84 58.0 6.19e-01 81.0% 88.6%
3549240 5.1.4.253 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta 0.81 57.0 3.29e-01 83.3% 8.3%
5015313 375.1.1.351 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26602 0.77 56.0 5.91e-01 90.5% 97.1%
5013313 377.1.3.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.76 55.0 5.77e-01 81.0% 94.3%
3178301 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 66.0 5.02e-01 100.0% 46.0%
4937956 375.1.1.351 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26602 0.75 54.0 5.61e-01 90.5% 94.3%
4990784 375.1.1.323 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Arc_trans_TRASH 0.75 54.0 5.66e-01 81.0% 94.3%
3272697 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 55.0 5.63e-01 85.7% 95.0%
3566304 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 55.0 5.61e-01 85.7% 92.5%
3232605 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 52.0 5.55e-01 81.0% 97.1%
3518169 376.1.3.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.71 52.0 4.27e-01 83.3% 42.5%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 54.0 5.14e-01 85.7% 76.0%
3394910 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 5.35e-01 78.6% 94.3%
3787741 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 56.0 5.15e-01 100.0% 66.7%
3642367 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 52.0 5.13e-01 81.0% 95.6%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 54.0 5.38e-01 88.1% 84.4%
3211768 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 59.0 4.43e-01 97.6% 49.5%
3271906 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.69 54.0 4.87e-01 88.1% 66.1%
5033522 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 53.0 5.08e-01 88.1% 78.0%
3275045 377.1.1.4 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.68 50.0 5.02e-01 88.1% 84.4%
3850433 376.1.1.96 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 0.67 56.0 5.42e-01 100.0% 98.0%
3494052 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 50.0 4.92e-01 85.7% 84.4%
3324238 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.66 52.0 4.87e-01 92.9% 96.4%
3805637 376.1.1.61 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.66 54.0 4.53e-01 100.0% 70.0%
3444000 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 54.0 4.82e-01 100.0% 86.2%
5068785 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 49.0 5.00e-01 83.3% 90.0%
3776602 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.65 45.0 2.80e-01 73.8% 91.9%
3743358 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 53.0 4.88e-01 100.0% 95.0%
3562969 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.65 53.0 4.76e-01 92.9% 66.7%
4999893 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.65 42.0 3.18e-01 73.8% 24.6%
3183646 376.1.1.61 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.65 52.0 4.40e-01 100.0% 65.1%
3252512 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 44.0 4.59e-01 73.8% 88.6%
5010149 377.1.1.131 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C 0.64 47.0 4.82e-01 83.3% 92.5%
3403532 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 44.0 4.66e-01 78.6% 91.4%
3430270 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.63 44.0 3.71e-01 73.8% 84.0%
3230790 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.60e-01 73.8% 56.2%
4019747 376.1.1.125 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2, zf-RING_UBOX 0.63 50.0 4.13e-01 100.0% 58.9%
3246456 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.48e-01 100.0% 80.0%
3173010 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.62 50.0 4.45e-01 100.0% 60.0%
3266105 376.1.1.61 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.62 50.0 4.65e-01 100.0% 96.7%
3671478 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.62 52.0 3.93e-01 100.0% 40.0%
3703350 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 49.0 4.68e-01 100.0% 98.2%
4585224 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 42.0 3.35e-01 73.8% 35.7%
3365051 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.61 41.0 2.64e-01 71.4% 14.3%
184816 376.1.3.11 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.61 49.0 4.13e-01 97.6% 73.4%
5031930 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.61 45.0 4.64e-01 83.3% 92.5%
3207695 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 44.0 4.27e-01 85.7% 70.0%
3176549 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.60 41.0 2.90e-01 73.8% 30.2%
3602941 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 45.0 3.73e-01 88.1% 84.7%
3426696 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 46.0 4.62e-01 90.5% 95.3%
3778751 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 47.0 3.64e-01 100.0% 59.1%
4085854 3695.1.1.0 few secondary structure elements › Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain › Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain › Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain 0.55 42.0 2.94e-01 78.6% 21.9%
4425819 376.1.3.7 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RAG2_PHD 0.54 40.0 3.52e-01 88.1% 90.7%
3607075 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.53 37.0 2.56e-01 73.8% 96.2%
D2 medium residues 51-82_137-267
PDB
D3 medium residues 83-136
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qxfA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.62 47.0 2.94e-01 85.2% 42.4%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 42.0 2.95e-01 74.1% 80.3%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 43.0 3.35e-01 77.8% 88.5%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 41.0 3.22e-01 83.3% 33.1%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.59 41.0 3.30e-01 74.1% 55.8%
3ir4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 47.0 3.66e-01 92.6% 68.3%
3i5qA02 1.10.167.20 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.57 39.0 3.55e-01 75.9% 87.7%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.56 43.0 3.85e-01 87.0% 58.2%
3otgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 41.0 2.86e-01 98.1% 21.4%
2oebA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.54 39.0 2.89e-01 77.8% 63.2%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.53 38.0 3.21e-01 77.8% 43.3%
4o1eB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.52 42.0 2.81e-01 100.0% 86.5%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 36.0 3.00e-01 79.6% 62.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029322 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.81 63.0 4.38e-01 100.0% 26.1%
3924946 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.73 56.0 3.64e-01 100.0% 18.1%
4971453 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 61.0 4.18e-01 100.0% 28.1%
5055734 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.70 61.0 4.26e-01 100.0% 41.7%
5014005 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.58 47.0 4.10e-01 87.0% 88.7%
3909752 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.22e-01 100.0% 75.6%
4057414 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.57 44.0 3.12e-01 83.3% 86.9%
3692 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.56 43.0 3.85e-01 87.0% 58.2%
3210584 101.1.1.336 alpha arrays › HTH › HTH › Three-helical HTH › Tri-helical 0.56 43.0 3.75e-01 85.2% 87.1%
3194082 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 38.0 2.37e-01 79.6% 26.6%
3361633 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 39.0 2.41e-01 77.8% 17.2%
4628161 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.52 41.0 3.25e-01 87.0% 51.3%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.51 41.0 3.52e-01 90.7% 60.0%
4930483 604.17.1.1 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.50 35.0 3.63e-01 77.8% 80.0%