Back to structures

IMGVR_UViG_2913510308_000001-2913510308-2913511613

Arc-Vir

IMGVR_UViG_2913510308_000001-2913510308-2913511613

Identity

Kingdom:
archaea

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-88
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.75 59.0 5.42e-01 100.0% 65.3%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.70 60.0 6.08e-01 95.9% 94.4%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.68 60.0 4.93e-01 95.9% 56.1%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.67 57.0 5.78e-01 93.2% 100.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.66 57.0 5.69e-01 93.2% 100.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.64 58.0 5.70e-01 98.6% 97.4%
2bkoA02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.58 44.0 4.31e-01 95.9% 75.3%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.56 42.0 3.22e-01 84.9% 82.6%
2aefA03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.55 42.0 4.15e-01 95.9% 77.2%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.54 41.0 3.15e-01 90.4% 32.3%
7agvB01 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.54 42.0 4.15e-01 97.3% 79.0%
2yubA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 44.0 3.96e-01 98.6% 83.6%
3soeA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 4.00e-01 100.0% 83.2%
1u3bA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 4.09e-01 98.6% 98.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002644 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.98 88.0 8.75e-01 93.2% 94.7%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.83 70.0 7.20e-01 95.9% 94.3%
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 59.0 6.54e-01 93.2% 96.6%
4963571 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 56.0 5.94e-01 95.9% 84.6%
3981037 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.76 54.0 6.10e-01 94.5% 100.0%
2526359 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.72 53.0 5.71e-01 97.3% 95.0%
2808420 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.72 59.0 5.15e-01 100.0% 59.6%
5022524 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 52.0 5.32e-01 97.3% 80.0%
3945288 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.70 63.0 4.99e-01 98.6% 51.4%
3945811 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.69 51.0 5.56e-01 91.8% 95.0%
3227803 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.69 57.0 5.99e-01 93.2% 100.0%
4988093 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.68 60.0 5.28e-01 94.5% 67.3%
4935036 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 6.14e-01 97.3% 97.3%
4956897 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.90e-01 97.3% 95.0%
4975116 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.67 58.0 5.69e-01 94.5% 91.3%
5083817 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.67 55.0 5.85e-01 93.2% 100.0%
4990371 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.67 58.0 5.92e-01 94.5% 97.1%
4991571 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 59.0 5.75e-01 95.9% 93.8%
5083172 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.67 47.0 5.30e-01 87.7% 100.0%
364260 70.4.1.3 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.67 60.0 4.50e-01 95.9% 66.9%
4938684 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 61.0 5.77e-01 100.0% 92.9%
2984229 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.66 59.0 5.77e-01 97.3% 94.9%
5012061 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.66 56.0 5.76e-01 91.8% 95.7%
5033307 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.66 59.0 4.70e-01 97.3% 95.7%
5011090 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 55.0 5.52e-01 91.8% 93.3%
3838054 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.62 55.0 5.47e-01 98.6% 97.3%
4215822 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.61 41.0 4.20e-01 95.9% 72.9%
5020951 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 43.0 4.17e-01 97.3% 75.3%
3621443 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.55 46.0 4.17e-01 100.0% 83.5%
3962811 3052.1.1.1 a+b complex topology › MoeA domain II › MoeA domain II › MoeA domain II › MoeA_N 0.52 43.0 4.06e-01 95.9% 75.6%
3798183 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 43.0 4.07e-01 98.6% 95.6%
3492939 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 43.0 3.87e-01 97.3% 84.8%
3622363 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 42.0 3.90e-01 98.6% 90.0%
D2 high residues 92-149
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.81 75.0 6.30e-01 100.0% 64.5%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.80 73.0 6.12e-01 100.0% 61.1%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.72 66.0 5.09e-01 100.0% 55.3%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.72 63.0 5.86e-01 98.3% 100.0%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.69 60.0 5.62e-01 100.0% 94.4%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 53.0 4.12e-01 100.0% 41.0%
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.66 49.0 4.56e-01 100.0% 62.7%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.65 48.0 4.25e-01 100.0% 54.7%
3g8rA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.60 49.0 4.43e-01 91.4% 74.1%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 41.0 2.78e-01 77.6% 18.9%
3r0hG01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 47.0 4.04e-01 100.0% 88.1%
5f67B00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 47.0 4.04e-01 100.0% 86.6%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 44.0 3.01e-01 100.0% 24.2%
2yt7A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 43.0 3.89e-01 96.6% 100.0%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 2.90e-01 82.8% 85.9%
7qu8A01 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.53 39.0 2.85e-01 87.9% 51.9%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 31.0 2.69e-01 100.0% 34.3%
2e7kA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 3.65e-01 98.3% 89.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002645 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.99 93.0 9.28e-01 98.3% 96.6%
5083817 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.89 83.0 7.91e-01 98.3% 100.0%
2559744 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.89 75.0 7.45e-01 100.0% 88.1%
3981037 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.83 72.0 7.44e-01 100.0% 100.0%
2640772 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.81 74.0 6.09e-01 100.0% 60.0%
3945288 70.4.1.7 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.80 73.0 5.35e-01 100.0% 49.3%
2808420 70.4.1.1 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.80 72.0 5.79e-01 100.0% 53.2%
5083816 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 71.0 6.64e-01 100.0% 92.9%
5016125 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 63.0 6.43e-01 100.0% 98.2%
5039270 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 60.0 6.20e-01 96.6% 94.5%
1176867 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 65.0 5.56e-01 100.0% 82.4%
5075574 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.73 64.0 5.75e-01 100.0% 92.5%
5083172 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.73 60.0 6.26e-01 91.4% 100.0%
5030835 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.72 64.0 5.63e-01 100.0% 88.2%
4602455 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.72 63.0 5.88e-01 100.0% 98.6%
4930420 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 62.0 5.86e-01 100.0% 80.0%
2526359 70.4.1.2 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.71 61.0 6.04e-01 100.0% 95.0%
4933166 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.70 62.0 5.57e-01 100.0% 95.0%
3214124 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.69 47.0 4.45e-01 100.0% 58.6%
5022524 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.69 58.0 5.53e-01 100.0% 80.0%
4409090 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.69 54.0 5.00e-01 100.0% 66.7%
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.68 52.0 3.64e-01 100.0% 25.8%
4072484 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.68 54.0 4.62e-01 100.0% 55.6%
3970319 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 50.0 4.35e-01 100.0% 53.3%
4215822 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.66 51.0 4.86e-01 100.0% 71.4%
4070519 70.1.1.1 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 54.0 5.06e-01 98.3% 98.7%
4029023 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.62 46.0 3.87e-01 100.0% 45.7%
4327412 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.57 48.0 4.42e-01 100.0% 71.2%
2723599 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 3.86e-01 100.0% 57.4%
4932742 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 37.0 3.09e-01 81.0% 85.0%
5044495 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 46.0 4.34e-01 100.0% 94.3%
4067340 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.51 43.0 3.18e-01 100.0% 51.4%