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IMGVR_UViG_2917938226_000001-2917938226-2917940976

Arc-Vir

IMGVR_UViG_2917938226_000001-2917938226-2917940976

Identity

Kingdom:
archaea

Quality

79.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12728.14 best HTH_17 49.1 8.00e-13 71.8% 96.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.79 55.0 5.31e-01 71.8% 74.7%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 56.0 4.67e-01 78.9% 51.2%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 57.0 5.72e-01 81.7% 89.0%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 57.0 5.08e-01 83.1% 64.6%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 53.0 4.45e-01 78.9% 50.0%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 53.0 4.54e-01 77.5% 54.0%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 55.0 5.19e-01 81.7% 74.1%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 53.0 5.33e-01 78.9% 87.5%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 53.0 5.45e-01 78.9% 92.5%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 51.0 4.62e-01 76.1% 56.7%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 57.0 4.53e-01 87.3% 97.1%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 51.0 4.23e-01 78.9% 47.7%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 48.0 4.88e-01 93.0% 79.4%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.21e-01 71.8% 64.0%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.38e-01 70.4% 73.1%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.97e-01 71.8% 57.4%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 37.0 3.89e-01 100.0% 67.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.84e-01 71.8% 63.4%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.90e-01 70.4% 67.9%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.89e-01 73.2% 62.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.91e-01 71.8% 64.3%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 37.0 4.05e-01 71.8% 76.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.64e-01 71.8% 61.0%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.26e-01 71.8% 40.3%
1vioA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.56 42.0 4.53e-01 98.6% 100.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.16e-01 71.8% 39.9%
4n3pA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.54 44.0 3.26e-01 94.4% 94.3%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.38e-01 78.9% 78.9%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.52 45.0 3.54e-01 98.6% 73.3%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 42.0 4.28e-01 93.0% 98.5%
2nraC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.49e-01 94.4% 70.0%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.63e-01 77.5% 73.2%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960483 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.93 63.0 7.50e-01 70.4% 100.0%
2168161 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.89 64.0 7.14e-01 74.6% 94.7%
4950846 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.89 61.0 7.17e-01 70.4% 100.0%
4527613 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.89 61.0 5.92e-01 73.2% 64.6%
4176315 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 61.0 6.97e-01 73.2% 94.4%
4682727 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 62.0 7.01e-01 93.0% 94.5%
4974340 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.88 61.0 6.82e-01 71.8% 100.0%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.87 63.0 7.05e-01 95.8% 98.2%
4933561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.87 60.0 6.69e-01 71.8% 94.5%
3962562 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.86 62.0 5.30e-01 74.6% 51.4%
4375315 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 58.0 6.74e-01 71.8% 100.0%
3953197 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 64.0 5.74e-01 91.5% 58.9%
5002797 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 66.0 7.14e-01 91.5% 96.7%
3278372 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.84 61.0 6.43e-01 97.2% 83.1%
4992437 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.83 56.0 6.05e-01 71.8% 81.7%
5032504 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 60.0 6.66e-01 94.4% 98.2%
5070666 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 60.0 6.70e-01 94.4% 98.2%
3285399 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.83 54.0 6.33e-01 74.6% 96.0%
3281256 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 62.0 5.97e-01 91.5% 70.0%
5028046 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.82 59.0 6.56e-01 94.4% 96.4%
4191032 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 56.0 6.46e-01 73.2% 100.0%
3589130 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 58.0 6.50e-01 76.1% 96.4%
5082561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 55.0 6.39e-01 73.2% 100.0%
4974775 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 58.0 6.30e-01 95.8% 88.3%
3281621 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 59.0 6.60e-01 94.4% 98.2%
4548007 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 63.0 5.90e-01 94.4% 68.2%
3954117 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 61.0 5.69e-01 91.5% 65.9%
3289439 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 60.0 6.62e-01 95.8% 100.0%
4994568 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.81 59.0 6.61e-01 95.8% 100.0%
1710781 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 56.0 6.25e-01 93.0% 92.9%
4995042 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 72.0 6.73e-01 95.8% 98.8%
4087721 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 57.0 5.99e-01 91.5% 83.1%
3587879 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.79 60.0 5.17e-01 81.7% 58.2%
3958314 101.1.9.66 alpha arrays › HTH › HTH › Putative DNA-binding domain › Rv2175c_wHTH 0.78 54.0 5.96e-01 90.1% 92.7%
4311945 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 56.0 4.55e-01 76.1% 42.3%
4198222 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.78 57.0 5.78e-01 100.0% 78.6%
3951460 101.30.1.3 alpha arrays › HTH › Rv2175c › Rv2175c › Rv2175c_wHTH 0.78 56.0 5.18e-01 76.1% 62.2%
3290032 101.1.9.126 alpha arrays › HTH › HTH › Putative DNA-binding domain › Rv2175c_C, Rv2175c_wHTH 0.77 55.0 4.73e-01 74.6% 49.1%
3385701 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.77 53.0 5.83e-01 76.1% 92.7%
3290892 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 58.0 5.04e-01 80.3% 61.9%
3284686 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.76 58.0 3.98e-01 80.3% 27.4%
4034325 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 57.0 4.72e-01 80.3% 51.2%
3957229 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 59.0 6.40e-01 95.8% 98.3%
4547937 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 55.0 6.03e-01 90.1% 94.8%
4420911 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 57.0 4.56e-01 80.3% 46.7%
3286117 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 56.0 4.67e-01 80.3% 50.4%
4672676 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 56.0 4.49e-01 80.3% 46.4%
3291218 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 57.0 4.66e-01 94.4% 44.6%
3949463 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 57.0 4.85e-01 81.7% 55.7%
3974460 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 56.0 4.60e-01 80.3% 46.9%
4101677 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 55.0 4.48e-01 78.9% 45.9%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.75 52.0 5.85e-01 93.0% 98.1%
4090636 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 56.0 5.70e-01 93.0% 81.4%
4051681 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 56.0 4.51e-01 93.0% 42.2%
3945289 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 55.0 4.55e-01 78.9% 50.4%
1827815 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 57.0 5.84e-01 81.7% 92.6%
3974607 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 56.0 4.57e-01 80.3% 48.5%
3838564 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 58.0 6.20e-01 88.7% 100.0%
5075145 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 60.0 6.22e-01 94.4% 93.8%
3966930 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 55.0 4.79e-01 80.3% 57.3%
4520820 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 54.0 5.34e-01 77.5% 80.0%
4668445 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 54.0 5.88e-01 94.4% 100.0%
4334333 101.1.9.1 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.74 55.0 4.40e-01 80.3% 45.0%
3948669 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.74 57.0 4.83e-01 83.1% 87.8%
3387406 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 56.0 4.91e-01 81.7% 61.0%
4266122 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 55.0 4.96e-01 91.5% 60.0%
4518241 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 55.0 5.44e-01 81.7% 84.0%
5073619 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 62.0 6.50e-01 93.0% 100.0%
3589467 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 50.0 4.78e-01 93.0% 61.2%
3840108 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.72 53.0 5.67e-01 91.5% 93.3%
3943313 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 53.0 4.59e-01 80.3% 55.7%
4061721 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 53.0 4.34e-01 78.9% 48.5%
3972191 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 51.0 4.11e-01 76.1% 42.1%
3975516 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 51.0 4.46e-01 76.1% 57.1%
3284986 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 51.0 4.29e-01 77.5% 50.0%
3290830 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.70 51.0 4.35e-01 77.5% 52.2%
3728047 101.1.9.30 alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.69 48.0 5.03e-01 73.2% 98.5%
3942751 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 55.0 4.61e-01 97.2% 50.8%
3284505 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.69 52.0 4.45e-01 81.7% 56.5%
3589675 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.68 46.0 5.16e-01 71.8% 98.0%
3280706 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 50.0 4.84e-01 78.9% 76.2%
3976015 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 54.0 5.26e-01 88.7% 100.0%
3281871 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 49.0 4.21e-01 78.9% 52.5%
3946974 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 56.0 4.94e-01 91.5% 64.8%
3979434 101.1.9.101 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1441 0.67 48.0 5.30e-01 78.9% 98.2%
3979592 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.66 55.0 4.64e-01 98.6% 54.2%
3946914 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 49.0 4.02e-01 78.9% 47.7%
4674139 101.1.9.30 alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.66 54.0 4.48e-01 91.5% 56.2%
3723668 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 3.55e-01 71.8% 35.2%
4078914 101.1.9.30 alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.65 46.0 4.50e-01 76.1% 80.0%
3976170 101.1.9.26 alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.64 53.0 5.42e-01 94.4% 91.4%
5030468 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 49.0 4.60e-01 97.2% 68.9%
4316703 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 49.0 4.97e-01 95.8% 97.1%