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IMGVR_UViG_2917938226_000001-2917938226-2917940977

Arc-Vir

IMGVR_UViG_2917938226_000001-2917938226-2917940977

Identity

Kingdom:
archaea

Quality

72.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 270-358
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08706.17 best D5_N 36.6 7.80e-09 89.9% 50.3%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.68 45.0 4.24e-01 100.0% 56.2%
3h2zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 49.0 3.96e-01 100.0% 41.5%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 4.34e-01 98.9% 61.4%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.63 43.0 3.72e-01 95.5% 45.0%
7dukB01 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 30.0 4.00e-01 93.3% 91.3%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 31.0 4.09e-01 93.3% 93.8%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 46.0 4.10e-01 97.8% 58.3%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 50.0 4.56e-01 92.1% 82.9%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.59 43.0 4.85e-01 83.1% 100.0%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.59 53.0 3.95e-01 98.9% 41.6%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 51.0 3.57e-01 100.0% 31.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 4.28e-01 94.4% 76.4%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.58 51.0 4.52e-01 100.0% 91.7%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 4.24e-01 100.0% 72.9%
1nkvB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 49.0 3.66e-01 97.8% 94.8%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 39.0 4.04e-01 98.9% 75.3%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 4.49e-01 89.9% 83.2%
5a0uA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.55 49.0 2.88e-01 100.0% 26.2%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 38.0 2.93e-01 70.8% 81.0%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 48.0 4.27e-01 100.0% 88.1%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.55 46.0 4.13e-01 100.0% 64.6%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.55 48.0 2.80e-01 100.0% 60.6%
1r9dA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.54 48.0 2.83e-01 100.0% 78.3%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.54 37.0 2.91e-01 73.0% 90.4%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.68e-01 84.3% 63.7%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 4.27e-01 98.9% 85.1%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.52 48.0 4.32e-01 100.0% 92.3%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.85e-01 94.4% 86.8%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.50e-01 97.8% 85.6%
3mfqA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.50 46.0 3.93e-01 98.9% 98.6%
1m5q102 3.30.310.60 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain 0.50 29.0 3.38e-01 89.9% 86.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592632 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 52.0 5.11e-01 91.0% 75.8%
4527504 150.5.1.122 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › ATG2_CAD 0.66 53.0 4.45e-01 96.6% 52.4%
5029773 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 44.0 4.73e-01 100.0% 82.4%
5054950 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.65 43.0 3.86e-01 95.5% 48.0%
4944333 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.65 57.0 5.08e-01 95.5% 84.0%
3987415 601.1.1.11 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB 0.65 59.0 4.89e-01 100.0% 66.2%
5012651 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.63 45.0 4.64e-01 97.8% 78.8%
4848262 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 55.0 5.17e-01 100.0% 95.3%
4028009 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 53.0 4.42e-01 98.9% 58.7%
3435543 192.15.1.77 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.58 47.0 4.31e-01 86.5% 84.3%
3707729 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.90e-01 91.0% 48.3%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 42.0 3.75e-01 76.4% 58.6%
3412062 603.1.1.19 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-18_N 0.57 53.0 3.74e-01 100.0% 38.8%
2588583 2485.1.1.39 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_2 0.57 26.0 3.00e-01 98.9% 57.1%
3172862 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.57 50.0 3.63e-01 100.0% 99.6%
1308051 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 38.0 2.94e-01 70.8% 81.4%
3269912 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.24e-01 96.6% 34.9%
4471483 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.55 44.0 4.00e-01 87.6% 66.7%
3239406 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.54 43.0 4.02e-01 87.6% 68.7%
3225080 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 51.0 4.47e-01 100.0% 80.8%
5081199 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 38.0 3.22e-01 74.2% 47.3%
4968259 3926.1.1.0 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.54 37.0 3.22e-01 71.9% 79.3%
3622481 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.53 41.0 3.84e-01 84.3% 65.2%
4960634 3755.3.1.127 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.53 39.0 3.27e-01 77.5% 79.4%
4967607 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 39.0 3.27e-01 77.5% 72.3%
4931058 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 39.0 3.10e-01 76.4% 71.8%
4964968 192.2.1.88 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N 0.52 39.0 3.20e-01 77.5% 76.9%
5005708 3755.3.1.127 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.52 38.0 3.07e-01 77.5% 51.7%
5031247 3755.3.1.127 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.52 37.0 3.03e-01 76.4% 72.4%
4141047 593.1.1.0 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.51 44.0 3.22e-01 98.9% 35.0%
3621004 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 44.0 4.25e-01 100.0% 100.0%
3203780 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.50 37.0 3.05e-01 77.5% 80.6%
3183105 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.50 44.0 3.26e-01 97.8% 55.3%
5024500 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.50 37.0 3.51e-01 77.5% 86.7%
D2 high residues 667-758
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 6.81e-01 92.4% 100.0%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 64.0 6.28e-01 98.9% 94.0%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 5.04e-01 91.3% 87.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 5.11e-01 91.3% 80.0%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 5.02e-01 90.2% 79.8%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.66 48.0 4.77e-01 91.3% 72.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.71e-01 90.2% 73.9%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 4.17e-01 91.3% 57.3%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 5.04e-01 91.3% 100.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.86e-01 91.3% 81.2%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.65 54.0 5.06e-01 91.3% 97.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 4.25e-01 91.3% 65.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 5.07e-01 91.3% 93.3%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.99e-01 91.3% 86.7%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 5.12e-01 90.2% 96.0%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 5.11e-01 89.1% 91.3%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 5.25e-01 98.9% 95.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.60e-01 91.3% 82.1%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.80e-01 91.3% 97.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.45e-01 91.3% 68.6%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 5.40e-01 90.2% 98.8%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.20e-01 91.3% 65.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 3.96e-01 91.3% 58.7%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 35.0 3.43e-01 84.8% 49.0%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 4.34e-01 91.3% 77.5%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.15e-01 90.2% 96.3%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.86e-01 91.3% 100.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.04e-01 92.4% 59.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.67e-01 93.5% 74.3%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.73e-01 91.3% 46.6%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.38e-01 91.3% 66.7%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.26e-01 89.1% 76.2%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.60 44.0 4.66e-01 92.4% 92.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.22e-01 92.4% 69.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.70e-01 91.3% 49.3%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 4.21e-01 90.2% 83.1%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 36.0 3.28e-01 89.1% 44.6%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.73e-01 90.2% 100.0%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 35.0 3.91e-01 72.8% 84.3%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.93e-01 91.3% 71.3%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 32.0 3.49e-01 70.7% 70.7%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.54 38.0 3.88e-01 98.9% 75.3%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.54 38.0 4.14e-01 90.2% 97.1%
2wa0A02 1.10.10.1210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH2 motif 0.53 46.0 4.38e-01 98.9% 80.5%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 4.02e-01 97.8% 95.8%
2lycA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.53 44.0 3.94e-01 91.3% 90.8%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.53 44.0 4.04e-01 91.3% 92.7%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.52 45.0 4.44e-01 100.0% 91.1%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3688358 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.82 63.0 6.77e-01 92.4% 93.8%
4012878 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 65.0 6.00e-01 94.6% 89.6%
4026719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 4.98e-01 91.3% 58.4%
3883278 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.73 67.0 6.62e-01 100.0% 95.8%
3743842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 64.0 6.28e-01 100.0% 90.0%
3519165 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.83e-01 91.3% 89.4%
3502634 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.71 46.0 5.32e-01 88.0% 93.8%
3258285 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.71 49.0 5.47e-01 90.2% 94.3%
5071694 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.21e-01 93.5% 70.0%
5046227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.49e-01 94.6% 87.1%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.70 53.0 4.72e-01 91.3% 57.4%
3382040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 4.58e-01 91.3% 60.9%
4933807 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.78e-01 91.3% 92.9%
5021360 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.69 49.0 4.98e-01 91.3% 76.4%
3373950 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.69 48.0 5.38e-01 91.3% 95.7%
3583168 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.68 53.0 4.96e-01 91.3% 68.2%
3268629 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 49.0 5.41e-01 88.0% 98.6%
3762392 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.68 57.0 4.30e-01 91.3% 43.8%
3998171 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.68 51.0 5.64e-01 89.1% 97.3%
4960288 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 51.0 4.13e-01 90.2% 42.3%
3898843 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.68 46.0 5.19e-01 89.1% 94.2%
2451843 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.67 48.0 4.79e-01 91.3% 72.3%
4255240 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 5.28e-01 84.8% 88.7%
4991792 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 5.32e-01 91.3% 98.6%
4543264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.49e-01 91.3% 49.1%
4977903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.45e-01 90.2% 93.8%
4936304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.15e-01 90.2% 85.9%
3441807 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 53.0 5.52e-01 94.6% 94.1%
2685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.76e-01 90.2% 76.4%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.07e-01 91.3% 82.2%
4937110 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.66 46.0 4.95e-01 90.2% 88.0%
3940471 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.62e-01 91.3% 95.3%
4339648 101.1.2.852 alpha arrays › HTH › HTH › winged helix domain › PF27213 0.66 49.0 4.85e-01 91.3% 74.7%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.66 55.0 4.32e-01 92.4% 44.9%
5028861 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 39.0 4.65e-01 83.7% 96.4%
4008061 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 5.13e-01 89.1% 94.7%
5034107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.96e-01 90.2% 84.7%
3389142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 5.09e-01 90.2% 88.2%
3244128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.22e-01 91.3% 85.3%
5046316 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 5.12e-01 89.1% 100.0%
4959927 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 47.0 3.84e-01 89.1% 41.8%
3403659 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.22e-01 91.3% 85.3%
5029213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.82e-01 90.2% 84.5%
5028329 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 5.13e-01 90.2% 97.3%
4250998 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 52.0 5.20e-01 90.2% 85.3%
3617345 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.63 52.0 5.11e-01 92.4% 82.0%
5035276 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.70e-01 91.3% 78.9%
4958724 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 46.0 4.42e-01 91.3% 67.6%
3925904 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.63 51.0 4.09e-01 91.3% 45.7%
4023459 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.83e-01 91.3% 88.7%
3386761 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.63 48.0 5.24e-01 89.1% 100.0%
3666925 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 56.0 5.10e-01 100.0% 90.4%
3166485 101.1.2.616 alpha arrays › HTH › HTH › winged helix domain › PF27833 0.62 51.0 4.49e-01 90.2% 72.9%
5047067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.99e-01 91.3% 90.6%
3740979 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.62 51.0 4.90e-01 89.1% 84.8%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 5.02e-01 100.0% 89.6%
3936962 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.62 47.0 4.30e-01 91.3% 60.8%
3605279 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 56.0 4.49e-01 100.0% 94.3%
3744213 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.61 45.0 3.90e-01 89.1% 50.0%
4977499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.13e-01 91.3% 60.0%
3179915 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.61 46.0 4.17e-01 91.3% 58.5%
4966085 101.1.2.385 alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD 0.60 40.0 4.37e-01 92.4% 84.0%
5061575 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 53.0 5.17e-01 98.9% 90.0%
3464462 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 3.84e-01 91.3% 84.1%
3405906 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 5.03e-01 90.2% 100.0%
3694234 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.58 48.0 3.88e-01 90.2% 47.6%
4364892 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 52.0 3.72e-01 100.0% 63.9%
5048461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.56e-01 91.3% 89.4%
3707675 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.61e-01 90.2% 97.3%
3571988 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.57 50.0 4.43e-01 98.9% 78.6%
5077205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.35e-01 91.3% 78.9%
3315108 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 44.0 4.19e-01 94.6% 70.0%
3242401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 4.95e-01 98.9% 91.6%
3815874 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.56 50.0 3.81e-01 97.8% 66.7%
3180198 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.56 44.0 4.38e-01 94.6% 82.1%
3466949 101.1.2.524 alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.56 44.0 4.16e-01 100.0% 69.6%
1142249 101.1.2.83 alpha arrays › HTH › HTH › winged helix domain › SKA1 0.54 45.0 4.13e-01 91.3% 78.2%
3304324 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.53 45.0 3.95e-01 93.5% 80.0%
4941095 3110.1.1.18 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF29470 0.52 34.0 3.17e-01 90.2% 53.5%
3242475 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.52 44.0 4.45e-01 98.9% 97.8%
3928213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.11e-01 98.9% 77.4%
D3 medium residues 67-156
PDB
D4 medium residues 193-269
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 52.0 5.24e-01 79.2% 69.2%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.74 56.0 4.40e-01 81.8% 38.5%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.73 52.0 4.42e-01 80.5% 45.3%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.69 52.0 4.95e-01 81.8% 68.5%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 5.15e-01 71.4% 94.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 56.0 3.83e-01 93.5% 84.7%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.67 56.0 5.20e-01 92.2% 82.8%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 51.0 4.39e-01 81.8% 95.9%
2g7sA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 53.0 4.06e-01 89.6% 40.5%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 48.0 4.04e-01 75.3% 48.0%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 53.0 4.47e-01 87.0% 100.0%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 53.0 4.42e-01 85.7% 95.4%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 54.0 4.52e-01 90.9% 96.3%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 51.0 3.89e-01 85.7% 43.7%
4gbjC02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 54.0 4.49e-01 90.9% 100.0%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 52.0 4.39e-01 88.3% 94.8%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 50.0 4.27e-01 84.4% 75.8%
3dpjF00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 51.0 3.91e-01 88.3% 42.6%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 51.0 4.25e-01 85.7% 95.5%
2nx4C00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 46.0 3.46e-01 75.3% 49.7%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.64 49.0 4.33e-01 80.5% 81.8%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 51.0 4.33e-01 88.3% 98.4%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 4.10e-01 74.0% 65.8%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 49.0 3.90e-01 89.6% 46.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.61 39.0 3.71e-01 71.4% 54.9%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.60 41.0 3.99e-01 70.1% 68.2%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.65e-01 85.7% 96.4%
2uxwA02 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.60 43.0 3.78e-01 76.6% 64.5%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.60 44.0 3.50e-01 79.2% 95.1%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.59 47.0 3.09e-01 89.6% 26.6%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 47.0 4.21e-01 90.9% 72.1%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 42.0 2.95e-01 80.5% 34.4%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 42.0 3.93e-01 81.8% 88.7%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 40.0 3.87e-01 77.9% 87.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 36.0 3.58e-01 70.1% 71.4%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.53 46.0 3.71e-01 96.1% 91.9%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 37.0 3.30e-01 76.6% 61.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.51 37.0 3.01e-01 77.9% 46.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3632341 101.1.1.176 alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.72 53.0 5.72e-01 77.9% 100.0%
3622492 109.4.1.1344 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28737 0.71 50.0 3.14e-01 83.1% 14.4%
3958071 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 58.0 5.90e-01 92.2% 100.0%
4175087 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.70 47.0 4.13e-01 84.4% 48.2%
4964648 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.70 56.0 4.00e-01 88.3% 69.4%
3923692 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.69 50.0 4.75e-01 75.3% 76.7%
3809136 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.68 52.0 5.51e-01 83.1% 96.9%
5061261 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.68 52.0 5.55e-01 84.4% 100.0%
3806415 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.68 57.0 5.04e-01 98.7% 63.5%
3212897 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 48.0 4.89e-01 76.6% 82.7%
5001590 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 45.0 5.08e-01 75.3% 98.2%
3948583 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.65 51.0 4.26e-01 85.7% 74.1%
4843090 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.65 50.0 4.42e-01 83.1% 99.1%
4952257 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.64 51.0 4.58e-01 84.4% 100.0%
3606516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.68e-01 76.6% 88.0%
3962482 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 5.00e-01 77.9% 93.8%
3592236 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 46.0 4.45e-01 76.6% 80.0%
4547477 601.2.1.5 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.63 51.0 4.60e-01 89.6% 91.8%
4944123 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.63 49.0 4.15e-01 84.4% 76.9%
4954674 101.31.1.0 alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit 0.63 53.0 4.80e-01 92.2% 94.3%
3637467 101.1.2.74 alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.62 49.0 4.47e-01 87.0% 94.2%
4945144 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 5.10e-01 88.3% 90.7%
3741234 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.61 44.0 3.86e-01 79.2% 50.4%
169088 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.61 49.0 5.11e-01 89.6% 97.2%
2521 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.61 47.0 4.52e-01 83.1% 75.0%
3590184 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.60 49.0 4.18e-01 93.5% 77.0%
3938318 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.59 41.0 3.50e-01 71.4% 55.8%
3522050 109.3.1.131 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C 0.59 40.0 4.13e-01 72.7% 73.0%
5042923 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 44.0 3.92e-01 81.8% 89.6%
4206040 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.58 40.0 3.16e-01 72.7% 76.8%
3509826 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 42.0 3.62e-01 77.9% 90.8%
4390762 628.1.1.1 alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.57 42.0 3.60e-01 76.6% 70.8%
3199608 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 41.0 3.68e-01 79.2% 100.0%
3713798 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 41.0 4.04e-01 85.7% 84.7%
5043437 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.51 42.0 3.87e-01 93.5% 96.2%
D5 medium residues 471-520_579-613_627-666
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 59.0 4.94e-01 84.8% 80.2%
3ch4B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 3.83e-01 82.4% 95.7%
2p67A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.94e-01 85.6% 97.3%
1uf9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.61e-01 79.2% 99.5%
3lp5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 3.29e-01 77.6% 93.6%
2f6rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.48e-01 82.4% 88.3%
2cxxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 3.68e-01 83.2% 100.0%
3lk7A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 39.0 3.35e-01 77.6% 90.8%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.53 45.0 3.84e-01 92.8% 95.5%
7uvpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.38e-01 88.0% 92.5%
2vf8B04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 48.0 4.10e-01 100.0% 93.4%
3ap1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.01e-01 78.4% 66.7%
1cjmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 3.16e-01 75.2% 72.2%
1qhxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 3.60e-01 82.4% 99.4%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.69e-01 85.6% 94.9%
5lklB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.71e-01 100.0% 69.4%
5awhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 41.0 3.67e-01 87.2% 89.9%
3w0lD02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.50 39.0 2.93e-01 83.2% 56.4%
3dpuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.75e-01 84.8% 98.7%
3tauA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.95e-01 84.0% 91.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964374 2004.1.1.116 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_chi 0.58 39.0 3.73e-01 100.0% 58.6%
5050242 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.57 45.0 3.89e-01 82.4% 97.4%
3706135 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.56 45.0 3.86e-01 86.4% 99.0%
3837305 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.55 47.0 3.49e-01 93.6% 76.7%
4058541 2004.1.1.60 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI 0.55 41.0 3.67e-01 80.0% 95.8%
3509277 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 46.0 3.80e-01 89.6% 89.1%
3596273 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.55 41.0 3.41e-01 78.4% 77.7%
3623444 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 43.0 3.46e-01 84.8% 88.8%
4823125 2004.1.1.682 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, GTP_EFTU 0.54 42.0 3.66e-01 84.0% 86.6%
3935945 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 37.0 3.56e-01 100.0% 60.7%
4029300 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 43.0 3.65e-01 88.8% 98.1%
3744778 2004.1.1.415 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, RuvB_N 0.52 47.0 3.86e-01 98.4% 79.6%
3617415 2004.5.1.14 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 0.52 42.0 3.71e-01 87.2% 80.5%
3271582 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 41.0 3.53e-01 86.4% 97.1%
2028439 2004.1.1.151 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Flavi_DEAD 0.51 38.0 3.63e-01 100.0% 64.1%
4980973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 3.38e-01 92.8% 87.3%
3996721 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 41.0 3.55e-01 84.8% 91.6%
4029103 2004.1.1.453 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, NOG1 0.51 39.0 3.51e-01 83.2% 94.6%
3822812 2004.1.1.104 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 0.51 41.0 2.95e-01 85.6% 90.0%
4967786 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.51 39.0 3.71e-01 80.8% 97.9%
4003285 2004.5.1.2 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Folliculin_C 0.50 40.0 3.22e-01 84.8% 67.2%