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IMGVR_UViG_2917938226_000001-2917938226-2917941002
Arc-VirIMGVR_UViG_2917938226_000001-2917938226-2917941002
Identity
- Kingdom:
- archaea
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 54.0 | 5.06e-01 | 98.1% | 62.5% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.75 | 60.0 | 4.91e-01 | 90.6% | 56.9% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.68 | 58.0 | 4.66e-01 | 98.1% | 75.2% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.67 | 46.0 | 4.01e-01 | 73.6% | 46.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 52.0 | 4.63e-01 | 96.2% | 59.2% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.67 | 51.0 | 4.90e-01 | 100.0% | 73.3% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.67 | 51.0 | 3.95e-01 | 84.9% | 55.4% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 54.0 | 4.86e-01 | 92.5% | 91.8% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 55.0 | 3.27e-01 | 98.1% | 44.8% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 49.0 | 3.59e-01 | 86.8% | 75.2% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 51.0 | 4.24e-01 | 92.5% | 55.0% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 49.0 | 3.25e-01 | 86.8% | 37.9% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.62 | 51.0 | 4.74e-01 | 100.0% | 71.6% |
| 2o8lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 51.0 | 4.20e-01 | 94.3% | 77.2% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 53.0 | 4.77e-01 | 100.0% | 72.2% |
| 1ckmA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.59 | 51.0 | 3.72e-01 | 100.0% | 94.2% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 49.0 | 3.81e-01 | 92.5% | 56.8% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.58 | 46.0 | 3.86e-01 | 96.2% | 84.0% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 42.0 | 2.88e-01 | 81.1% | 57.5% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.57 | 48.0 | 3.21e-01 | 100.0% | 23.4% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.57 | 41.0 | 3.93e-01 | 77.4% | 71.0% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.57 | 37.0 | 3.94e-01 | 73.6% | 79.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 43.0 | 3.33e-01 | 94.3% | 49.6% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 3.96e-01 | 100.0% | 64.9% |
| 1gkkA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.76e-01 | 92.5% | 85.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 40.0 | 4.01e-01 | 86.8% | 89.5% |
| 4dgwC00 | 2.60.40.2690 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 2.85e-01 | 77.4% | 63.1% |
| 3dohA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.82e-01 | 90.6% | 55.8% |
| 3ga7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 41.0 | 2.63e-01 | 90.6% | 82.8% |
| 1e5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.01e-01 | 90.6% | 65.8% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.52 | 37.0 | 2.56e-01 | 86.8% | 21.5% |
| 4indA01 | 2.60.120.1320 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.03e-01 | 90.6% | 72.6% |
| 6kd0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.56e-01 | 92.5% | 84.2% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 39.0 | 2.99e-01 | 88.7% | 66.2% |
| 3slzA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 39.0 | 3.15e-01 | 88.7% | 66.7% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.51 | 41.0 | 2.71e-01 | 96.2% | 88.6% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 39.0 | 2.62e-01 | 90.6% | 43.9% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 40.0 | 3.19e-01 | 92.5% | 70.9% |
| 8e9gD01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.50 | 39.0 | 2.39e-01 | 90.6% | 94.5% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4278184 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.80 | 68.0 | 5.91e-01 | 98.1% | 62.5% |
| 3805766 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.79 | 55.0 | 5.47e-01 | 94.3% | 70.9% |
| 4246480 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.77 | 65.0 | 5.25e-01 | 90.6% | 57.9% |
| 3834112 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.75 | 63.0 | 5.38e-01 | 96.2% | 60.0% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 57.0 | 5.13e-01 | 84.9% | 61.3% |
| 3457106 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.73 | 60.0 | 5.63e-01 | 98.1% | 72.3% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.72 | 59.0 | 5.54e-01 | 98.1% | 72.3% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.72 | 62.0 | 5.02e-01 | 98.1% | 51.6% |
| 4929875 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.72 | 53.0 | 4.32e-01 | 98.1% | 42.0% |
| 3996279 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.72 | 52.0 | 4.56e-01 | 96.2% | 51.2% |
| 3999725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 55.0 | 4.61e-01 | 100.0% | 50.6% |
| 4319764 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 56.0 | 4.40e-01 | 84.9% | 41.8% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 55.0 | 5.16e-01 | 96.2% | 67.7% |
| 3236689 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 51.0 | 5.13e-01 | 98.1% | 74.5% |
| 3597513 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 52.0 | 5.17e-01 | 96.2% | 76.4% |
| 3834563 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 63.0 | 5.45e-01 | 100.0% | 65.0% |
| 4958339 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.70 | 50.0 | 4.00e-01 | 98.1% | 37.3% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.69 | 48.0 | 4.56e-01 | 75.5% | 84.6% |
| 3357709 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.67 | 61.0 | 5.16e-01 | 100.0% | 61.2% |
| 4010630 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.67 | 58.0 | 3.41e-01 | 98.1% | 46.0% |
| 3249895 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 57.0 | 5.22e-01 | 96.2% | 78.6% |
| 3991229 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.67 | 61.0 | 4.20e-01 | 100.0% | 60.6% |
| 3831339 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.65 | 59.0 | 3.69e-01 | 100.0% | 51.7% |
| 5031715 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 45.0 | 3.43e-01 | 96.2% | 29.6% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 3.47e-01 | 92.5% | 34.5% |
| 3781440 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.63 | 56.0 | 4.91e-01 | 100.0% | 81.2% |
| 3689576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 3.98e-01 | 100.0% | 78.1% |
| 5081098 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.63 | 52.0 | 3.29e-01 | 96.2% | 40.3% |
| 5038529 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.63 | 44.0 | 4.20e-01 | 75.5% | 61.5% |
| 3246086 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 56.0 | 4.63e-01 | 100.0% | 76.8% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 56.0 | 3.59e-01 | 96.2% | 33.8% |
| 5074282 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 5.11e-01 | 94.3% | 94.5% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.61 | 52.0 | 4.25e-01 | 100.0% | 65.7% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.61 | 46.0 | 4.24e-01 | 83.0% | 85.7% |
| 3630782 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.61 | 55.0 | 3.98e-01 | 100.0% | 37.9% |
| 3606476 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.61 | 41.0 | 4.11e-01 | 71.7% | 70.9% |
| 4929236 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.60 | 45.0 | 4.19e-01 | 83.0% | 85.7% |
| 3886032 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.60 | 50.0 | 4.17e-01 | 100.0% | 80.0% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.62e-01 | 100.0% | 69.3% |
| 3845425 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 52.0 | 4.36e-01 | 98.1% | 73.3% |
| 3623045 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.59 | 49.0 | 3.24e-01 | 94.3% | 94.8% |
| 3226827 | 4.1.1.133 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_YG-box | 0.59 | 52.0 | 4.19e-01 | 100.0% | 52.4% |
| 3625263 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.11e-01 | 98.1% | 59.0% |
| 3765274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 4.33e-01 | 100.0% | 74.4% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.04e-01 | 84.9% | 68.6% |
| 4998648 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 44.0 | 3.71e-01 | 92.5% | 47.4% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.57 | 51.0 | 4.11e-01 | 100.0% | 65.0% |
| 3816041 | 2004.1.1.299 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 | 0.57 | 43.0 | 2.81e-01 | 88.7% | 44.9% |
| 5005640 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.56 | 45.0 | 4.27e-01 | 90.6% | 73.8% |
| 4958514 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 39.0 | 3.32e-01 | 77.4% | 85.0% |
| 3989353 | 9.9.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 | 0.55 | 42.0 | 3.41e-01 | 94.3% | 54.4% |
| 5072187 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.55 | 46.0 | 2.73e-01 | 100.0% | 44.4% |
| 3492710 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.55 | 41.0 | 3.83e-01 | 92.5% | 66.2% |
| 4998245 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 41.0 | 3.07e-01 | 86.8% | 36.1% |
| 3231090 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.54 | 42.0 | 3.70e-01 | 94.3% | 91.1% |
| 4473128 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.54 | 39.0 | 3.72e-01 | 81.1% | 92.3% |
| 5013748 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 40.0 | 2.81e-01 | 88.7% | 32.7% |
| 3415779 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.51 | 38.0 | 3.60e-01 | 90.6% | 67.1% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.50 | 36.0 | 3.47e-01 | 92.5% | 66.2% |