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IMGVR_UViG_2917938226_000001-2917938226-2917941006

Arc-Vir

Identity

Accession:: IMGVR_UViG_2917938226_000001-2917938226-2917941006 ↗
Kingdom:: archaea

Quality

84.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-182

PDB

Domain cluster: rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632

D2 medium residues 186-209_228-293

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k0rA01	3.30.1480.10	Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain	0.66	33.0	3.24e-01	87.8%	42.4%
1ju2A02	3.30.410.40	Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 ›	0.53	42.0	3.37e-01	85.6%	87.8%
5lnkJ01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.52	39.0	3.26e-01	92.2%	43.2%
3nv6A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.50	42.0	2.75e-01	92.2%	64.1%
3kraC00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	41.0	3.03e-01	94.4%	51.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
138184	141.1.1.0 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases	0.50	41.0	3.07e-01	94.4%	53.9%

D3 medium residues 210-227_294-326

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2iylD01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.54	40.0	3.85e-01	88.2%	84.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4966033	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.65	39.0	3.73e-01	92.2%	53.4%
3948653	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.60	36.0	3.48e-01	92.2%	51.7%

D4 medium residues 327-351_462-532

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o3mB01	1.20.1270.370	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	28.0	2.74e-01	93.8%	41.7%
1yfmA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.52	31.0	2.83e-01	97.9%	44.4%

D5 medium residues 352-461

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13708.12 best	DUF4942	64.5	1.50e-17	95.5%	52.1%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jcmH04	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.61	28.0	3.35e-01	79.1%	62.3%
3ezjA02	3.30.1370.120	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.61	29.0	3.53e-01	78.2%	69.1%
2py5A05	4.10.80.20	Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5	0.60	19.0	3.23e-01	86.4%	90.0%
2yd1A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	32.0	3.38e-01	100.0%	62.6%
1fhgA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	32.0	3.32e-01	100.0%	59.8%
2j8hA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	32.0	3.37e-01	100.0%	63.9%
1u2hA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	31.0	3.31e-01	100.0%	63.5%
2w5eA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.54	27.0	3.20e-01	96.4%	68.9%
1g1cA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	31.0	3.30e-01	100.0%	62.2%
1t02A02	3.90.770.10	Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2	0.54	43.0	3.33e-01	87.3%	96.9%
1avaA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.52	27.0	3.60e-01	92.7%	96.6%
4ye4L01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	37.0	3.76e-01	100.0%	73.5%
2uvaG11	6.10.60.10	Special › Helix non-globular › Hydrophobic Seed Protein ›	0.51	25.0	3.34e-01	91.8%	92.7%
4bndA02	3.30.1240.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain	0.51	32.0	3.38e-01	100.0%	71.9%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3984768	3018.1.1.4 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › DUF4942	0.80	69.0	6.52e-01	100.0%	77.7%
4328415	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.62	45.0	4.97e-01	86.4%	97.6%
4521261	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.62	47.0	4.44e-01	98.2%	66.9%
4166150	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.62	45.0	4.64e-01	96.4%	80.0%
5004606	306.2.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor	0.62	46.0	4.54e-01	97.3%	72.5%
4653780	3012.1.1.5 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › T6PP_C	0.61	37.0	3.89e-01	100.0%	66.0%
4446499	331.1.1.6 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378	0.61	32.0	3.75e-01	78.2%	71.2%
4058788	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.58	32.0	3.63e-01	100.0%	69.4%
4640225	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.58	38.0	4.27e-01	74.5%	90.0%
4930705	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.56	33.0	4.16e-01	100.0%	100.0%
3825215	387.1.5.7 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL	0.56	28.0	3.93e-01	79.1%	98.2%
3334474	7581.1.1.25 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C	0.54	40.0	3.27e-01	79.1%	78.2%
1681684	244.1.1.9 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C	0.53	39.0	3.26e-01	76.4%	97.0%
3735293	101.1.2.312 ↗	alpha arrays › HTH › HTH › winged helix domain › MSC	0.51	32.0	2.47e-01	96.4%	26.9%
3597627	304.151.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase	0.51	33.0	3.25e-01	79.1%	61.7%
5026584	101.1.2.55 ↗	alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB	0.50	27.0	2.93e-01	93.6%	60.0%
3738922	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.50	42.0	3.79e-01	92.7%	92.3%