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IMGVR_UViG_2926421783_000002-2926421783-2926423297
Arc-VirIMGVR_UViG_2926421783_000002-2926421783-2926423297
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 88-148
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03837.20 best | RecT | 28.6 | 1.40e-06 | 100.0% | 33.5% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.70 | 54.0 | 3.56e-01 | 85.2% | 20.8% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.67 | 51.0 | 3.35e-01 | 85.2% | 19.2% |
| 6ks6a01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.67 | 53.0 | 3.42e-01 | 86.9% | 21.7% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.67 | 49.0 | 3.04e-01 | 78.7% | 76.7% |
| 2wnwA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 55.0 | 3.50e-01 | 96.7% | 95.0% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 51.0 | 4.77e-01 | 100.0% | 91.6% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 41.0 | 3.53e-01 | 100.0% | 45.2% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 50.0 | 4.65e-01 | 100.0% | 91.6% |
| 1dp4C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 40.0 | 2.80e-01 | 70.5% | 96.1% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.59 | 43.0 | 2.94e-01 | 88.5% | 19.2% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 3.96e-01 | 73.8% | 69.4% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.59 | 50.0 | 3.82e-01 | 100.0% | 73.1% |
| 3lidA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 42.0 | 3.30e-01 | 78.7% | 91.0% |
| 3x3bA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 43.0 | 2.90e-01 | 86.9% | 90.8% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.56 | 43.0 | 3.74e-01 | 85.2% | 82.5% |
| 3hhgE01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.39e-01 | 72.1% | 63.6% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.55 | 39.0 | 3.99e-01 | 75.4% | 93.2% |
| 3bvpB00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.55 | 47.0 | 3.76e-01 | 100.0% | 80.8% |
| 2mc3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.05e-01 | 70.5% | 56.3% |
| 3fjuB00 | 3.30.40.170 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 38.0 | 3.75e-01 | 78.7% | 75.4% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.15e-01 | 72.1% | 56.7% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.05e-01 | 96.7% | 84.1% |
| 2jjsC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.99e-01 | 75.4% | 51.3% |
| 1iq8A03 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.51 | 43.0 | 4.12e-01 | 100.0% | 95.9% |
| 1gngA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 40.0 | 2.75e-01 | 91.8% | 26.7% |
| 2zo4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.88e-01 | 73.8% | 91.8% |
| 4f9cA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 43.0 | 3.03e-01 | 95.1% | 60.2% |
| 2pvjA01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 44.0 | 3.00e-01 | 100.0% | 55.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011299 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 54.0 | 4.32e-01 | 78.7% | 93.9% |
| 5079289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 43.0 | 3.63e-01 | 73.8% | 38.1% |
| 3595399 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.65 | 49.0 | 3.26e-01 | 86.9% | 19.2% |
| 4928371 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.65 | 45.0 | 3.92e-01 | 72.1% | 61.1% |
| 5079308 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.64 | 44.0 | 3.48e-01 | 72.1% | 40.8% |
| 5006819 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.64 | 44.0 | 3.78e-01 | 72.1% | 53.7% |
| 4934857 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.63 | 43.0 | 3.86e-01 | 70.5% | 64.7% |
| 5031515 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.63 | 43.0 | 3.72e-01 | 72.1% | 57.9% |
| 4012859 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 39.0 | 3.31e-01 | 73.8% | 37.1% |
| 4319999 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.62 | 42.0 | 3.63e-01 | 70.5% | 80.0% |
| 3898596 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.61 | 43.0 | 2.83e-01 | 75.4% | 92.6% |
| 4970622 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 41.0 | 3.65e-01 | 70.5% | 61.1% |
| 4374756 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.60 | 40.0 | 3.64e-01 | 70.5% | 60.0% |
| None | — | 0.60 | 39.0 | 3.33e-01 | 73.8% | 39.0% | |
| None | — | 0.60 | 40.0 | 3.32e-01 | 72.1% | 38.2% | |
| 3233967 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.60 | 42.0 | 2.68e-01 | 75.4% | 33.5% |
| 4672682 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.59 | 40.0 | 3.42e-01 | 70.5% | 53.0% |
| 4254926 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.75e-01 | 70.5% | 70.7% |
| None | — | 0.58 | 38.0 | 3.26e-01 | 73.8% | 39.0% | |
| 5031901 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.58 | 41.0 | 3.26e-01 | 75.4% | 36.2% |
| 3832037 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 36.0 | 2.38e-01 | 72.1% | 13.6% |
| 4501841 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.58 | 39.0 | 3.62e-01 | 70.5% | 65.0% |
| 4420420 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 3.41e-01 | 70.5% | 58.9% |
| 3589664 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 39.0 | 3.54e-01 | 72.1% | 61.2% |
| 4864568 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.57 | 37.0 | 3.20e-01 | 72.1% | 39.6% |
| 4679870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.39e-01 | 72.1% | 54.7% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.32e-01 | 72.1% | 53.1% |
| 3478717 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.55 | 40.0 | 3.28e-01 | 77.0% | 67.8% |
| 3206236 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.54 | 34.0 | 3.09e-01 | 72.1% | 41.1% |
| 3658936 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 47.0 | 3.43e-01 | 100.0% | 64.4% |
| 3259230 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.54 | 37.0 | 3.15e-01 | 77.0% | 44.0% |
| 4959386 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 34.0 | 3.59e-01 | 85.2% | 78.0% |
| 3710117 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.23e-01 | 70.5% | 48.9% |
| 4013939 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 2.83e-01 | 77.0% | 91.5% |
| 3384684 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 34.0 | 3.18e-01 | 73.8% | 48.2% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 35.0 | 3.13e-01 | 70.5% | 57.9% |
| 3217457 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.52 | 39.0 | 3.47e-01 | 80.3% | 76.7% |
| 3922862 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.52 | 38.0 | 3.09e-01 | 80.3% | 76.0% |
| 3921366 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 36.0 | 3.39e-01 | 91.8% | 60.0% |
| 3670690 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 44.0 | 2.74e-01 | 98.4% | 66.1% |
| 5049796 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 4.05e-01 | 86.9% | 89.1% |
| 3302118 | 327.16.1.16 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Myb_DNA-bind_3 | 0.51 | 32.0 | 3.16e-01 | 72.1% | 55.7% |
| 4004641 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.51 | 38.0 | 3.73e-01 | 96.7% | 72.9% |
| 3731261 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.51 | 40.0 | 3.44e-01 | 85.2% | 65.3% |
| 3529285 | 4144.2.1.0 ↗ | alpha duplicates or obligate multimers › YejL-like › D domain of Cdc4 and beta-TrCP › D domain of Cdc4 and beta-TrCP | 0.51 | 40.0 | 3.71e-01 | 88.5% | 83.7% |
| 4024192 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 33.0 | 3.59e-01 | 91.8% | 93.3% |
D2
high
residues 152-249
Domain cluster:
rep: MH673674.1__AYJ74791.1__phiMa_08__00008__D72-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03837.20 best | RecT | 56.4 | 4.30e-15 | 100.0% | 56.4% |