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IMGVR_UViG_3300000032_000525-3300000032-Draft_001830416
Arc-VirIMGVR_UViG_3300000032_000525-3300000032-Draft_001830416
Identity
- Kingdom:
- archaea
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-80
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.77 | 69.0 | 4.84e-01 | 96.1% | 33.9% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 40.0 | 4.60e-01 | 82.9% | 100.0% |
| 2f46A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 46.0 | 3.77e-01 | 88.2% | 88.7% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.57 | 40.0 | 3.75e-01 | 73.7% | 61.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034069 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 61.0 | 7.17e-01 | 81.6% | 100.0% |
| 3589854 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 64.0 | 6.89e-01 | 76.3% | 89.2% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 79.0 | 5.69e-01 | 100.0% | 38.0% |
| 4004483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 75.0 | 5.46e-01 | 100.0% | 38.9% |
| 4380833 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 71.0 | 5.46e-01 | 100.0% | 44.2% |
| 4031675 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 70.0 | 7.02e-01 | 93.4% | 93.6% |
| 4994277 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 74.0 | 5.50e-01 | 100.0% | 43.3% |
| 3514120 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.80 | 57.0 | 6.29e-01 | 75.0% | 95.0% |
| 4173465 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.79 | 55.0 | 6.27e-01 | 75.0% | 100.0% |
| 4933966 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.79 | 57.0 | 6.23e-01 | 76.3% | 95.0% |
| 5080070 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 55.0 | 6.35e-01 | 75.0% | 100.0% |
| 4281782 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 54.0 | 5.53e-01 | 73.7% | 73.3% |
| 3290335 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 55.0 | 5.95e-01 | 76.3% | 87.7% |
| 4400327 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 55.0 | 5.17e-01 | 75.0% | 76.7% |
| 3943131 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 52.0 | 5.81e-01 | 76.3% | 90.0% |
| 4024558 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.76 | 55.0 | 4.52e-01 | 77.6% | 57.1% |
| 2417767 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 55.0 | 6.14e-01 | 76.3% | 98.3% |
| 4441096 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 54.0 | 5.95e-01 | 76.3% | 100.0% |
| 4966033 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.74 | 54.0 | 6.04e-01 | 75.0% | 100.0% |
| 4031756 | 101.1.2.645 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_40 | 0.58 | 43.0 | 4.20e-01 | 81.6% | 85.9% |
| 4537429 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.57 | 50.0 | 3.79e-01 | 100.0% | 72.3% |
| 2439657 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.53 | 42.0 | 4.04e-01 | 85.5% | 76.7% |
| 3219466 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 2.80e-01 | 85.5% | 35.2% |
D2
medium
residues 97-140
Domain cluster:
rep: IMGVR_UViG_2684622506_000001-2684622506-2684651364__D16-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13240.12 best | Zn_Ribbon_1 | 25.6 | 1.00e-05 | 52.3% | 82.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 52.0 | 3.91e-01 | 100.0% | 33.0% |
| 6denA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.61 | 44.0 | 2.76e-01 | 90.9% | 14.9% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 43.0 | 3.49e-01 | 79.5% | 64.8% |
| 5mx4A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.56 | 43.0 | 2.79e-01 | 86.4% | 61.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 53.0 | 5.53e-01 | 70.5% | 82.5% |
| 3274493 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 50.0 | 5.22e-01 | 81.8% | 87.5% |
| 3748183 | 375.1.1.4 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP | 0.68 | 49.0 | 4.45e-01 | 77.3% | 100.0% |
| 4968690 | 109.4.1.3615 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zn_Ribbon_1 | 0.64 | 56.0 | 3.53e-01 | 97.7% | 87.9% |
| 4067548 | 386.1.1.79 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › UPF0547 | 0.63 | 53.0 | 4.94e-01 | 93.2% | 81.8% |
| 4635530 | 4028.1.1.1 ↗ | beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase | 0.56 | 45.0 | 2.69e-01 | 100.0% | 34.8% |
| 4319207 | 101.1.1.506 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Tnp_P_element_C | 0.55 | 46.0 | 3.23e-01 | 90.9% | 40.8% |
| 5051287 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.53 | 48.0 | 3.03e-01 | 100.0% | 98.6% |