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IMGVR_UViG_3300000082_000010-3300000082-GBSSSed77CDRAFT_0002103
Arc-VirIMGVR_UViG_3300000082_000010-3300000082-GBSSSed77CDRAFT_0002103
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-70
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 43.0 | 2.62e-01 | 77.2% | 13.3% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 43.0 | 2.74e-01 | 77.2% | 94.5% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.58 | 39.0 | 3.16e-01 | 75.4% | 32.8% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 32.0 | 3.08e-01 | 78.9% | 46.9% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.57 | 33.0 | 3.47e-01 | 100.0% | 62.7% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 45.0 | 2.71e-01 | 94.7% | 28.0% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 38.0 | 2.68e-01 | 91.2% | 21.2% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 29.0 | 2.80e-01 | 91.2% | 40.0% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 3.19e-01 | 86.0% | 75.4% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.53 | 33.0 | 2.90e-01 | 70.2% | 38.7% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 46.0 | 3.48e-01 | 100.0% | 68.6% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 39.0 | 3.10e-01 | 84.2% | 75.2% |
| 6zzmA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 36.0 | 2.48e-01 | 75.4% | 82.9% |
| 4b9gA00 | 2.60.40.3480 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.09e-01 | 87.7% | 87.0% |
| 2jl6101 | 2.20.150.30 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › | 0.51 | 33.0 | 3.46e-01 | 75.4% | 83.7% |
| 4r7vA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 2.81e-01 | 78.9% | 61.1% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 34.0 | 2.28e-01 | 78.9% | 14.5% |
| 2h6cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 2.99e-01 | 84.2% | 72.1% |
| 6qk7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 40.0 | 2.57e-01 | 94.7% | 40.8% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 2.79e-01 | 75.4% | 90.7% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 33.0 | 2.50e-01 | 70.2% | 36.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005105 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 46.0 | 3.97e-01 | 87.7% | 44.4% |
| 1622905 | 719.1.1.4 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N | 0.59 | 35.0 | 3.34e-01 | 80.7% | 47.8% |
| 4935509 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 37.0 | 3.28e-01 | 71.9% | 41.1% |
| 1031129 | 11.1.4.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4458 | 0.58 | 39.0 | 3.18e-01 | 75.4% | 33.3% |
| 4470389 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 38.0 | 2.82e-01 | 75.4% | 23.5% |
| 3735831 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.57 | 45.0 | 3.21e-01 | 91.2% | 28.0% |
| 3164538 | 5084.1.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane | 0.56 | 39.0 | 2.86e-01 | 78.9% | 29.7% |
| 4663897 | 12.1.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 | 0.54 | 37.0 | 3.00e-01 | 73.7% | 73.3% |
| 4565271 | 220.1.1.71 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 | 0.54 | 44.0 | 3.58e-01 | 100.0% | 48.8% |
| 5055109 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.53 | 40.0 | 3.56e-01 | 87.7% | 54.4% |
| 5076770 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 40.0 | 3.44e-01 | 98.2% | 52.0% |
| 5074002 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 41.0 | 3.59e-01 | 98.2% | 57.9% |
| 4935003 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 40.0 | 3.75e-01 | 100.0% | 72.0% |
| 5075687 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.50 | 40.0 | 3.63e-01 | 100.0% | 63.5% |
| 5054892 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.50 | 40.0 | 3.61e-01 | 98.2% | 61.1% |