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IMGVR_UViG_3300000083_000021-3300000083-GBSSWat77CDRAFT_00093512
Arc-VirIMGVR_UViG_3300000083_000021-3300000083-GBSSWat77CDRAFT_00093512
Identity
- Kingdom:
- archaea
Quality
44.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-95_112-208
D2
high
residues 249-295
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.76 | 51.0 | 5.69e-01 | 70.2% | 91.7% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.76 | 55.0 | 5.59e-01 | 80.9% | 78.7% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.75 | 53.0 | 5.84e-01 | 80.9% | 97.3% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.74 | 53.0 | 5.32e-01 | 76.6% | 95.7% |
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.73 | 54.0 | 4.30e-01 | 80.9% | 40.0% |
| 3a43B02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.72 | 49.0 | 5.44e-01 | 78.7% | 97.1% |
| 1twfL00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.72 | 52.0 | 5.25e-01 | 83.0% | 78.3% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.71 | 51.0 | 5.18e-01 | 76.6% | 97.8% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.69 | 55.0 | 5.43e-01 | 87.2% | 83.7% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.69 | 42.0 | 2.66e-01 | 100.0% | 13.0% |
| 4aybP00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.69 | 49.0 | 5.08e-01 | 80.9% | 81.8% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.69 | 50.0 | 3.37e-01 | 78.7% | 22.5% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 54.0 | 5.30e-01 | 87.2% | 86.0% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 52.0 | 4.99e-01 | 87.2% | 85.5% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 44.0 | 4.19e-01 | 74.5% | 76.8% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 41.0 | 4.07e-01 | 76.6% | 66.7% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.60 | 41.0 | 4.32e-01 | 80.9% | 89.5% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.23e-01 | 100.0% | 100.0% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 38.0 | 3.86e-01 | 74.5% | 66.7% |
| 5ovnA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 40.0 | 3.20e-01 | 76.6% | 62.8% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 39.0 | 2.58e-01 | 80.9% | 17.3% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.07e-01 | 91.5% | 59.9% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080678 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.80 | 55.0 | 5.23e-01 | 72.3% | 69.1% |
| 5066735 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 61.0 | 6.00e-01 | 80.9% | 84.0% |
| 4938122 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.78 | 56.0 | 5.77e-01 | 80.9% | 80.0% |
| 5082049 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 54.0 | 5.79e-01 | 72.3% | 85.0% |
| 3361170 | 375.1.1.201 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 | 0.78 | 58.0 | 5.74e-01 | 80.9% | 78.0% |
| 3812959 | 375.1.1.201 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 | 0.77 | 54.0 | 5.82e-01 | 74.5% | 90.0% |
| 4968629 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 53.0 | 5.03e-01 | 72.3% | 63.0% |
| 1874307 | 375.1.1.65 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N | 0.76 | 51.0 | 5.69e-01 | 70.2% | 91.7% |
| 3414926 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.76 | 53.0 | 5.94e-01 | 78.7% | 100.0% |
| 3383755 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 54.0 | 5.50e-01 | 74.5% | 80.0% |
| 5068970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 54.0 | 5.90e-01 | 74.5% | 92.1% |
| 3983308 | 375.1.1.231 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-FPG_IleRS | 0.76 | 51.0 | 5.47e-01 | 70.2% | 82.5% |
| 3480424 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 54.0 | 5.79e-01 | 87.2% | 92.5% |
| 4062038 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 50.0 | 5.48e-01 | 72.3% | 100.0% |
| 3489248 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.74 | 55.0 | 5.86e-01 | 89.4% | 95.0% |
| 3508055 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.74 | 57.0 | 5.31e-01 | 85.1% | 67.2% |
| 4933371 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 56.0 | 6.05e-01 | 80.9% | 97.5% |
| 3455086 | 650.1.1.7 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Zn_ribbon_20 | 0.74 | 58.0 | 5.91e-01 | 89.4% | 88.9% |
| 3368649 | 375.1.1.201 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 | 0.74 | 53.0 | 5.62e-01 | 76.6% | 92.5% |
| 4969277 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 51.0 | 5.41e-01 | 72.3% | 85.0% |
| 4126506 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.74 | 52.0 | 5.18e-01 | 78.7% | 72.0% |
| 4953501 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 52.0 | 5.55e-01 | 78.7% | 90.0% |
| 4941681 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 55.0 | 5.06e-01 | 80.9% | 98.3% |
| 3836858 | 375.3.1.4 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › Zn_ribbon_20 | 0.73 | 51.0 | 5.05e-01 | 74.5% | 72.0% |
| 3598330 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 56.0 | 3.82e-01 | 83.0% | 37.5% |
| 3942720 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.73 | 56.0 | 3.94e-01 | 83.0% | 82.9% |
| 3312874 | 375.3.1.0 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger | 0.73 | 57.0 | 5.67e-01 | 89.4% | 82.0% |
| 5015298 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 53.0 | 5.25e-01 | 78.7% | 74.0% |
| 4982902 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 50.0 | 5.36e-01 | 72.3% | 85.0% |
| 4290243 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.72 | 51.0 | 5.04e-01 | 78.7% | 72.0% |
| 5016027 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 49.0 | 3.96e-01 | 72.3% | 37.8% |
| 4982253 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 49.0 | 5.50e-01 | 72.3% | 97.1% |
| 4953502 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 51.0 | 4.61e-01 | 78.7% | 55.4% |
| 4287559 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.71 | 54.0 | 5.50e-01 | 80.9% | 86.7% |
| 3452569 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 52.0 | 5.50e-01 | 78.7% | 95.0% |
| 3933289 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 55.0 | 5.59e-01 | 91.5% | 88.9% |
| 4245473 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.71 | 50.0 | 4.23e-01 | 74.5% | 73.3% |
| 4665551 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.71 | 49.0 | 5.00e-01 | 76.6% | 77.8% |
| 4593708 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.71 | 49.0 | 5.03e-01 | 76.6% | 77.8% |
| 4085524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 47.0 | 5.21e-01 | 72.3% | 94.3% |
| 4099915 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.70 | 47.0 | 5.23e-01 | 72.3% | 94.3% |
| 5052663 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 51.0 | 5.40e-01 | 78.7% | 92.5% |
| 4963432 | 4076.2.1.7 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 | 0.70 | 62.0 | 5.08e-01 | 100.0% | 71.8% |
| 4970537 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 51.0 | 5.45e-01 | 80.9% | 90.0% |
| 4161260 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.70 | 50.0 | 5.09e-01 | 80.9% | 82.2% |
| 4190103 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.69 | 48.0 | 5.14e-01 | 76.6% | 92.1% |
| 4318638 | 375.1.1.81 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_10 | 0.69 | 46.0 | 4.57e-01 | 70.2% | 70.0% |
| 4507405 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.68 | 50.0 | 5.10e-01 | 87.2% | 84.4% |
| 3719787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 49.0 | 5.24e-01 | 78.7% | 100.0% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 48.0 | 4.93e-01 | 80.9% | 82.2% |
| 4021767 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.67 | 48.0 | 5.10e-01 | 78.7% | 92.5% |
| 4215687 | 375.1.1.32 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADK_lid | 0.66 | 50.0 | 5.11e-01 | 80.9% | 86.7% |
| 3541580 | 375.1.1.78 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-3CxxC_2 | 0.64 | 45.0 | 3.99e-01 | 76.6% | 48.6% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 49.0 | 3.23e-01 | 87.2% | 19.5% |
| 3226989 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.64 | 51.0 | 4.90e-01 | 91.5% | 94.5% |
| 4960524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 51.0 | 5.18e-01 | 91.5% | 97.8% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.63 | 47.0 | 3.29e-01 | 83.0% | 25.0% |
| 3388528 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.62 | 46.0 | 4.82e-01 | 80.9% | 95.0% |
| 5080684 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.62 | 49.0 | 3.47e-01 | 89.4% | 27.7% |
| 4241167 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.62 | 45.0 | 3.11e-01 | 80.9% | 22.9% |
| 4518520 | 375.1.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin | 0.61 | 41.0 | 4.44e-01 | 80.9% | 97.1% |
| 3415761 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.61 | 46.0 | 4.56e-01 | 85.1% | 96.0% |
| 3718655 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.61 | 47.0 | 3.91e-01 | 89.4% | 46.2% |
| 3810348 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.61 | 51.0 | 3.71e-01 | 97.9% | 75.0% |
| 4374415 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.61 | 46.0 | 3.99e-01 | 83.0% | 85.3% |
| 3424305 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 47.0 | 3.89e-01 | 89.4% | 46.7% |
| 4971492 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.59 | 51.0 | 3.03e-01 | 100.0% | 30.7% |
| 3591477 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 47.0 | 3.98e-01 | 95.7% | 52.2% |
| 4221969 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.58 | 40.0 | 3.23e-01 | 78.7% | 32.7% |
| 4600977 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 49.0 | 3.16e-01 | 100.0% | 38.6% |
| 4176817 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.55 | 48.0 | 3.14e-01 | 100.0% | 38.0% |
| 3441043 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.53 | 39.0 | 3.20e-01 | 83.0% | 97.0% |
| 4556132 | 375.1.1.74 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mu-like_Com | 0.52 | 35.0 | 3.78e-01 | 72.3% | 100.0% |
| 3914802 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 37.0 | 3.42e-01 | 83.0% | 60.0% |