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IMGVR_UViG_3300000109_000002-3300000109-GBSCECS85c_100020228
Arc-VirIMGVR_UViG_3300000109_000002-3300000109-GBSCECS85c_100020228
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-76
Domain cluster:
representative
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4z7eA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.71 | 59.0 | 4.49e-01 | 91.7% | 42.2% |
| 1fvqA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 44.0 | 4.41e-01 | 81.9% | 62.5% |
| 2zbiA02 | 3.30.70.2120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 53.0 | 4.65e-01 | 81.9% | 67.0% |
| 4ne4A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.69 | 58.0 | 4.44e-01 | 93.1% | 41.9% |
| 1sw2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.69 | 57.0 | 4.36e-01 | 91.7% | 42.8% |
| 3o66B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.67 | 56.0 | 4.30e-01 | 94.4% | 41.7% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.66 | 49.0 | 4.99e-01 | 100.0% | 80.3% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.65 | 41.0 | 3.97e-01 | 81.9% | 56.1% |
| 8c9vA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 46.0 | 3.47e-01 | 100.0% | 31.5% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.46e-01 | 100.0% | 64.9% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.61 | 54.0 | 5.10e-01 | 100.0% | 84.1% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.61 | 47.0 | 4.80e-01 | 100.0% | 87.1% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.07e-01 | 80.6% | 75.4% |
| 2bl0B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 43.0 | 4.47e-01 | 100.0% | 82.4% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.60 | 48.0 | 4.36e-01 | 100.0% | 64.4% |
| 7dg2C01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.60 | 49.0 | 4.85e-01 | 100.0% | 89.3% |
| 4izzB03 | 1.10.10.1670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain | 0.60 | 51.0 | 4.49e-01 | 100.0% | 94.8% |
| 4txiA03 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.60 | 48.0 | 4.26e-01 | 87.5% | 82.5% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.59 | 51.0 | 4.95e-01 | 100.0% | 92.5% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.59 | 51.0 | 4.64e-01 | 100.0% | 72.3% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 4.80e-01 | 100.0% | 90.6% |
| 1whrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.59 | 43.0 | 3.67e-01 | 100.0% | 46.0% |
| 3e3xA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.59 | 42.0 | 3.68e-01 | 84.7% | 48.7% |
| 2be4A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 49.0 | 4.60e-01 | 100.0% | 76.1% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 43.0 | 3.37e-01 | 100.0% | 35.6% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 50.0 | 4.83e-01 | 100.0% | 87.7% |
| 4b09B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 50.0 | 4.57e-01 | 100.0% | 85.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 49.0 | 3.67e-01 | 91.7% | 40.1% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.57 | 49.0 | 4.78e-01 | 100.0% | 86.4% |
| 1iq3A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 42.0 | 3.71e-01 | 100.0% | 51.8% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.49e-01 | 100.0% | 88.0% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 42.0 | 3.58e-01 | 80.6% | 74.2% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 3.58e-01 | 100.0% | 42.5% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.49e-01 | 100.0% | 85.3% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 49.0 | 4.88e-01 | 100.0% | 94.7% |
| 6hwjA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.56 | 46.0 | 3.31e-01 | 94.4% | 77.5% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.17e-01 | 100.0% | 70.3% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.83e-01 | 100.0% | 59.4% |
| 1xb4B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 48.0 | 4.79e-01 | 100.0% | 94.7% |
| 3cs1A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 42.0 | 4.08e-01 | 100.0% | 72.3% |
| 3cuqB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.56e-01 | 100.0% | 86.3% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.15e-01 | 100.0% | 67.0% |
| 5zorA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 40.0 | 4.02e-01 | 100.0% | 78.1% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.05e-01 | 91.7% | 71.6% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.55 | 39.0 | 3.25e-01 | 86.1% | 40.6% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.55 | 42.0 | 3.84e-01 | 87.5% | 62.5% |
| 3irpX01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.32e-01 | 97.2% | 39.5% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 47.0 | 3.95e-01 | 100.0% | 74.8% |
| 7y6oA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.77e-01 | 87.5% | 63.3% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 4.34e-01 | 100.0% | 95.7% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 33.0 | 3.44e-01 | 79.2% | 65.2% |
| 3qrxA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 38.0 | 3.94e-01 | 94.4% | 80.9% |
| 4y66F01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.27e-01 | 98.6% | 97.0% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 46.0 | 3.60e-01 | 98.6% | 51.6% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.52 | 36.0 | 3.16e-01 | 100.0% | 45.4% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 4.05e-01 | 98.6% | 78.7% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.50 | 36.0 | 3.53e-01 | 87.5% | 69.7% |
| 1y1aA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 40.0 | 3.82e-01 | 95.8% | 74.7% |
| 1weyA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 39.0 | 3.52e-01 | 86.1% | 65.4% |
| 4tshB01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 45.0 | 3.40e-01 | 100.0% | 42.8% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3237732 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.72 | 51.0 | 4.32e-01 | 100.0% | 46.1% |
| 4014318 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.71 | 52.0 | 4.92e-01 | 100.0% | 64.7% |
| 1633251 | 3618.1.1.1 ↗ | beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin_IN | 0.70 | 54.0 | 4.48e-01 | 81.9% | 58.9% |
| 3291138 | 7523.1.1.17 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC | 0.69 | 56.0 | 4.30e-01 | 94.4% | 37.7% |
| 3188677 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.68 | 46.0 | 4.46e-01 | 87.5% | 62.5% |
| 4033445 | 7523.1.1.17 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC | 0.68 | 56.0 | 4.16e-01 | 93.1% | 36.1% |
| 3236950 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.67 | 48.0 | 4.87e-01 | 97.2% | 78.6% |
| 3260870 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.66 | 53.0 | 4.90e-01 | 100.0% | 68.9% |
| 4547498 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 53.0 | 3.61e-01 | 100.0% | 24.2% |
| 3168706 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.65 | 56.0 | 4.88e-01 | 100.0% | 86.1% |
| 3725516 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.65 | 57.0 | 3.61e-01 | 100.0% | 40.0% |
| 3719467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 53.0 | 5.13e-01 | 100.0% | 83.5% |
| 3638163 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.63 | 51.0 | 4.56e-01 | 100.0% | 62.6% |
| 5023789 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 49.0 | 4.68e-01 | 100.0% | 71.8% |
| 3567088 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 5.01e-01 | 100.0% | 88.0% |
| 3733040 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.62 | 51.0 | 4.81e-01 | 100.0% | 74.4% |
| 3588037 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 4.41e-01 | 100.0% | 59.1% |
| 5046509 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 4.77e-01 | 100.0% | 82.7% |
| 3787753 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.62 | 50.0 | 4.54e-01 | 100.0% | 64.8% |
| 4011800 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 4.03e-01 | 100.0% | 43.1% |
| 4026467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 50.0 | 5.11e-01 | 100.0% | 92.9% |
| 4407982 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.61 | 50.0 | 4.92e-01 | 100.0% | 86.3% |
| 3936962 | 101.1.2.124 ↗ | alpha arrays › HTH › HTH › winged helix domain › Kin17_mid | 0.61 | 51.0 | 4.30e-01 | 100.0% | 55.2% |
| 3370400 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.55e-01 | 100.0% | 81.4% |
| 4934328 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.81e-01 | 100.0% | 90.0% |
| 3666925 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.60 | 51.0 | 4.36e-01 | 100.0% | 56.8% |
| 3420624 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.60 | 50.0 | 4.54e-01 | 100.0% | 66.7% |
| 4027193 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.77e-01 | 100.0% | 78.9% |
| 4376599 | 6102.1.1.1 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA | 0.60 | 47.0 | 3.39e-01 | 100.0% | 28.6% |
| 3617345 | 101.1.2.151 ↗ | alpha arrays › HTH › HTH › winged helix domain › COR | 0.60 | 51.0 | 4.65e-01 | 100.0% | 78.0% |
| 5063407 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 4.54e-01 | 100.0% | 84.3% |
| 5030899 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.68e-01 | 100.0% | 90.0% |
| 3972071 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.59 | 40.0 | 3.87e-01 | 87.5% | 62.5% |
| 3739376 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.59 | 47.0 | 4.35e-01 | 100.0% | 67.3% |
| 3405906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 51.0 | 4.95e-01 | 100.0% | 93.8% |
| 3875839 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.59 | 51.0 | 4.43e-01 | 100.0% | 63.5% |
| 3202786 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.59 | 38.0 | 3.37e-01 | 79.2% | 43.6% |
| 3349840 | 101.1.2.74 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cnd2 | 0.59 | 49.0 | 4.68e-01 | 100.0% | 84.4% |
| 3940471 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 49.0 | 4.70e-01 | 100.0% | 89.4% |
| 3441807 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.58 | 48.0 | 4.66e-01 | 100.0% | 82.4% |
| 4324596 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.58 | 50.0 | 4.72e-01 | 100.0% | 91.1% |
| 5077205 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 49.0 | 4.52e-01 | 100.0% | 73.7% |
| 3481408 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 3.73e-01 | 100.0% | 36.9% |
| 4029698 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.17e-01 | 100.0% | 65.0% |
| 3167881 | 101.1.2.74 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cnd2 | 0.58 | 48.0 | 4.32e-01 | 100.0% | 84.5% |
| 3628907 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.57 | 47.0 | 2.68e-01 | 100.0% | 11.5% |
| 5035276 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 4.26e-01 | 100.0% | 72.2% |
| 3227729 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 49.0 | 4.41e-01 | 100.0% | 69.5% |
| 5048954 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 51.0 | 4.38e-01 | 100.0% | 62.6% |
| None | — | 0.57 | 48.0 | 4.42e-01 | 100.0% | 72.0% | |
| 4347454 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.57 | 43.0 | 4.42e-01 | 100.0% | 88.6% |
| 4186742 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.57 | 45.0 | 4.64e-01 | 100.0% | 92.9% |
| 3958385 | 101.1.2.670 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4194 | 0.57 | 49.0 | 4.47e-01 | 100.0% | 75.0% |
| 4976066 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 4.75e-01 | 100.0% | 95.0% |
| 4014246 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 3.31e-01 | 100.0% | 29.2% |
| 1519214 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 47.0 | 4.33e-01 | 100.0% | 70.6% |
| 3632795 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.56 | 48.0 | 4.28e-01 | 100.0% | 73.6% |
| 3224616 | 604.1.1.230 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EFhand_Ca_insen, EF-hand_6, EF-hand_7 | 0.56 | 46.0 | 3.64e-01 | 100.0% | 41.9% |
| 4993671 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.28e-01 | 100.0% | 73.3% |
| 3925904 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.56 | 47.0 | 3.68e-01 | 100.0% | 42.9% |
| 3409516 | 108.1.1.107 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 | 0.56 | 46.0 | 4.41e-01 | 100.0% | 78.8% |
| 4167932 | 101.1.2.177 ↗ | alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS | 0.55 | 46.0 | 4.39e-01 | 100.0% | 81.2% |
| 4928669 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.55 | 46.0 | 4.17e-01 | 100.0% | 70.5% |
| 4659379 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.55 | 44.0 | 4.50e-01 | 100.0% | 95.7% |
| 5047465 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 48.0 | 3.91e-01 | 100.0% | 71.2% |
| 3840298 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.54 | 45.0 | 3.86e-01 | 100.0% | 58.5% |
| 3892957 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 44.0 | 4.04e-01 | 100.0% | 67.6% |
| 5077304 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.54 | 45.0 | 4.47e-01 | 94.4% | 94.7% |
| 3216952 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 4.33e-01 | 100.0% | 82.4% |
| 4024318 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 4.28e-01 | 100.0% | 83.5% |
| 3785110 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.83e-01 | 100.0% | 73.3% |
| 3611229 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.19e-01 | 100.0% | 28.4% |
| 3267697 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.77e-01 | 98.6% | 79.3% |
| 4933807 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 4.39e-01 | 100.0% | 84.7% |
| 3478227 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 4.00e-01 | 100.0% | 82.9% |
| 3718225 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.53 | 42.0 | 3.41e-01 | 87.5% | 49.3% |
| 3665515 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.53 | 39.0 | 3.72e-01 | 95.8% | 65.6% |
| 4157944 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.53 | 42.0 | 4.21e-01 | 100.0% | 90.7% |
| 4976651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 4.28e-01 | 100.0% | 94.3% |
| 4943354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 43.0 | 4.27e-01 | 100.0% | 87.3% |
| 3365938 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.53 | 43.0 | 4.10e-01 | 100.0% | 77.8% |
| 3444225 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.52 | 39.0 | 3.79e-01 | 95.8% | 70.6% |
D2
high
residues 113-294
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 36.6 | 8.40e-09 | 79.7% | 94.7% |
| PF07728.21 | AAA_5 | 66.2 | 4.50e-18 | 78.0% | 100.0% |
| PF13401.13 | AAA_22 | 30.6 | 5.20e-07 | 70.3% | 78.5% |
D3
high
residues 300-395
Domain cluster:
rep: pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00052__D308-394
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08406.17 best | CbbQ_C | 28.4 | 2.10e-06 | 95.8% | 90.6% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rh7A01 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.82 | 76.0 | 4.94e-01 | 100.0% | 31.1% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.72 | 50.0 | 5.77e-01 | 72.9% | 100.0% |
| 3k1rA01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.70 | 41.0 | 4.44e-01 | 86.5% | 69.1% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.69 | 55.0 | 5.00e-01 | 87.5% | 64.6% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 61.0 | 4.57e-01 | 97.9% | 49.2% |
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.63 | 45.0 | 4.61e-01 | 100.0% | 76.8% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 51.0 | 4.66e-01 | 87.5% | 69.3% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 42.0 | 4.48e-01 | 75.0% | 85.2% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.60 | 47.0 | 4.73e-01 | 83.3% | 83.3% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 43.0 | 3.94e-01 | 76.0% | 76.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 45.0 | 4.63e-01 | 82.3% | 93.2% |
| 3looB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 42.0 | 3.06e-01 | 78.1% | 60.1% |
| 4nwpD00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.57 | 42.0 | 3.62e-01 | 76.0% | 89.9% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 46.0 | 4.59e-01 | 89.6% | 90.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.57 | 47.0 | 4.54e-01 | 91.7% | 92.7% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 43.0 | 4.20e-01 | 85.4% | 75.5% |
| 4kd6A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 38.0 | 3.01e-01 | 70.8% | 90.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 44.0 | 4.17e-01 | 86.5% | 92.4% |
| 4doyA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 42.0 | 3.47e-01 | 86.5% | 69.4% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.61e-01 | 86.5% | 53.9% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 34.0 | 3.64e-01 | 75.0% | 78.3% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 32.0 | 3.71e-01 | 75.0% | 95.3% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.50 | 37.0 | 3.24e-01 | 76.0% | 64.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4948085 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.98 | 96.0 | 9.46e-01 | 100.0% | 96.0% |
| 3944791 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.91 | 79.0 | 8.20e-01 | 100.0% | 96.7% |
| 5063952 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.91 | 74.0 | 5.21e-01 | 95.8% | 31.2% |
| 4565984 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.91 | 85.0 | 8.37e-01 | 100.0% | 93.0% |
| 3607806 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.90 | 83.0 | 8.00e-01 | 100.0% | 87.6% |
| 3398772 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 82.0 | 7.74e-01 | 100.0% | 83.6% |
| 3871672 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.88 | 80.0 | 7.62e-01 | 100.0% | 83.6% |
| 4939888 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.88 | 82.0 | 8.07e-01 | 99.0% | 100.0% |
| 4958530 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.88 | 82.0 | 7.95e-01 | 100.0% | 96.2% |
| 4928225 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 81.0 | 8.05e-01 | 100.0% | 94.0% |
| 4974816 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 82.0 | 7.77e-01 | 100.0% | 96.4% |
| 4997975 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.75 | 67.0 | 6.45e-01 | 99.0% | 98.2% |
| 5023247 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.64 | 44.0 | 3.68e-01 | 70.8% | 51.2% |
| 3197170 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.64 | 44.0 | 3.58e-01 | 83.3% | 36.3% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 51.0 | 5.07e-01 | 86.5% | 83.0% |
| 3260583 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 52.0 | 4.27e-01 | 88.5% | 57.7% |
| 3682363 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.63 | 46.0 | 4.20e-01 | 85.4% | 57.4% |
| 3984343 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.61 | 47.0 | 3.77e-01 | 91.7% | 40.0% |
| 3807233 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.60 | 46.0 | 4.03e-01 | 84.4% | 69.7% |
| 3260740 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.60 | 46.0 | 4.72e-01 | 81.2% | 90.0% |
| 5029116 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.58 | 46.0 | 3.84e-01 | 88.5% | 90.6% |
| 4096537 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.58 | 46.0 | 3.79e-01 | 88.5% | 64.3% |
| 3822810 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.57 | 39.0 | 3.91e-01 | 70.8% | 78.0% |
| 4823728 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 47.0 | 4.58e-01 | 91.7% | 94.2% |
| 3247662 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.56 | 49.0 | 4.09e-01 | 100.0% | 74.9% |
| 3655235 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 41.0 | 3.59e-01 | 83.3% | 51.0% |
| 4933576 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.56 | 41.0 | 3.42e-01 | 79.2% | 53.8% |
| 3805676 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.55 | 39.0 | 4.08e-01 | 78.1% | 78.9% |
| 3685743 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 40.0 | 4.23e-01 | 80.2% | 89.4% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.55 | 41.0 | 3.53e-01 | 80.2% | 88.7% |
| 4976309 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 43.0 | 4.27e-01 | 88.5% | 81.9% |
| 3966587 | 3352.1.1.46 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › TgpA_N | 0.54 | 43.0 | 3.70e-01 | 86.5% | 85.8% |
| 3962373 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.53 | 41.0 | 3.78e-01 | 96.9% | 61.5% |
| 4014341 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 40.0 | 2.78e-01 | 84.4% | 66.7% |
| 5028878 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.51 | 43.0 | 3.64e-01 | 100.0% | 72.8% |