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IMGVR_UViG_3300000146_000054-3300000146-SI54feb11_120mDRAFT_10020936

Arc-Vir

IMGVR_UViG_3300000146_000054-3300000146-SI54feb11_120mDRAFT_10020936

Identity

Kingdom:
archaea

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-185
PDB
Domain cluster: rep: IMGVR_UViG_3300025622_000448-3300025622-Ga0209264_10052341__D23-150
D2 high residues 196-307_549-568
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 29.0 3.76e-01 78.8% 90.9%
2xtzA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.55 36.0 3.67e-01 90.9% 66.7%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.55 24.0 2.96e-01 84.8% 63.0%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.52 21.0 3.28e-01 75.0% 100.0%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.52 41.0 3.49e-01 83.3% 71.3%
1xaiA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 31.0 2.82e-01 91.7% 40.3%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 27.0 3.67e-01 90.9% 100.0%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 26.0 3.43e-01 91.7% 96.9%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.50 25.0 3.35e-01 78.8% 92.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975019 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.66 51.0 4.93e-01 80.3% 100.0%
3785885 4970.1.1.4 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.62 45.0 4.25e-01 84.1% 61.9%
5015285 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 26.0 1.86e-01 100.0% 13.6%
3740688 7076.1.1.0 ↗ 0.60 28.0 3.64e-01 83.3% 76.0%
3652237 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.56 45.0 4.46e-01 84.8% 89.3%
5079124 1075.1.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.56 44.0 3.59e-01 83.3% 66.5%
4944401 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.53 40.0 3.79e-01 78.8% 89.0%
5060253 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.53 26.0 3.44e-01 92.4% 90.8%
1566530 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.52 32.0 3.99e-01 78.8% 100.0%
3886268 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.51 35.0 3.83e-01 90.9% 84.5%
5039049 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.51 34.0 3.95e-01 85.6% 97.8%
D3 high residues 316-438
PDB
Domain cluster: rep: IMGVR_UViG_3300028277_000461-3300028277-Ga0257116_100575910__D122-242
D4 medium residues 439-548
PDB
Domain cluster: rep: BC_09192017_0_5m_scaffold_0_prodigal-single.1__X__X__00086__D566-674
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 58.0 4.97e-01 92.7% 61.8%
3pjxA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 47.0 4.03e-01 87.3% 71.3%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 31.0 2.73e-01 87.3% 37.9%
4mgrA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 36.0 2.48e-01 73.6% 21.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975021 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 47.0 5.19e-01 72.7% 94.3%
5011765 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 48.0 4.52e-01 87.3% 91.9%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.57 34.0 4.16e-01 76.4% 92.9%
3652637 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 39.0 3.83e-01 72.7% 66.7%
3504598 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.54 44.0 3.06e-01 87.3% 40.5%
3652870 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 43.0 3.36e-01 92.7% 49.4%