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IMGVR_UViG_3300000151_000007-3300000151-SI53jan11_200mDRAFT_10003016
Arc-VirIMGVR_UViG_3300000151_000007-3300000151-SI53jan11_200mDRAFT_10003016
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-224
Domain cluster:
rep: IMGVR_UViG_3300005275_000006-3300005275-Ga0065719_10659036__D3-197
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 47.0 | 4.74e-01 | 100.0% | 65.0% |
| 2bgoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.71 | 38.0 | 5.15e-01 | 99.1% | 99.1% |
| 3w5mA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.69 | 36.0 | 4.80e-01 | 100.0% | 92.5% |
| 4mgqA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.69 | 35.0 | 4.22e-01 | 89.2% | 71.8% |
| 3j4uH00 | 2.60.120.1110 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 39.0 | 4.74e-01 | 100.0% | 90.0% |
| 7wqxA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.64 | 32.0 | 4.47e-01 | 95.1% | 100.0% |
| 6mvfA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 41.0 | 4.97e-01 | 100.0% | 97.3% |
| 4bbwA01 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 42.0 | 4.83e-01 | 98.7% | 91.3% |
| 1o59A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 39.0 | 4.84e-01 | 100.0% | 100.0% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 42.0 | 4.93e-01 | 100.0% | 97.4% |
| 2fnqA01 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.61 | 27.0 | 3.72e-01 | 70.4% | 79.6% |
| 1xe0C00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.61 | 29.0 | 4.16e-01 | 98.2% | 97.0% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 41.0 | 4.79e-01 | 100.0% | 95.5% |
| 1js8B02 | 2.60.310.10 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain | 0.60 | 29.0 | 4.11e-01 | 72.2% | 97.1% |
| 3w6wB02 | 2.60.310.20 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › | 0.59 | 31.0 | 3.88e-01 | 72.2% | 80.9% |
| 1f15B00 | 2.60.120.530 | Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A | 0.59 | 38.0 | 4.13e-01 | 100.0% | 75.8% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 40.0 | 4.71e-01 | 99.6% | 99.4% |
| 4d7yA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 34.0 | 4.29e-01 | 99.6% | 96.2% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 39.0 | 4.59e-01 | 98.7% | 96.8% |
| 4ht1T00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 34.0 | 4.28e-01 | 99.1% | 96.9% |
| 8begA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 38.0 | 4.34e-01 | 96.0% | 92.5% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 34.0 | 4.15e-01 | 99.1% | 99.3% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 25.0 | 3.56e-01 | 87.4% | 98.9% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 39.0 | 3.97e-01 | 100.0% | 73.9% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 36.0 | 4.14e-01 | 99.6% | 93.1% |
| 3iiiA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 4.49e-01 | 99.6% | 96.7% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 29.0 | 3.79e-01 | 99.6% | 98.3% |
| 3w57A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 27.0 | 3.70e-01 | 76.7% | 97.3% |
| 2ws9300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.89e-01 | 100.0% | 74.3% |
| 3j26N01 | 2.60.120.1100 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 4.05e-01 | 100.0% | 94.1% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 3.51e-01 | 100.0% | 61.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970100 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.92 | 70.0 | 7.91e-01 | 97.8% | 98.3% |
| 5032741 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.91 | 67.0 | 7.74e-01 | 99.1% | 98.8% |
| 5058402 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.91 | 70.0 | 7.87e-01 | 100.0% | 97.8% |
| 4984620 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.91 | 74.0 | 8.07e-01 | 100.0% | 97.9% |
| 4955832 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.91 | 67.0 | 7.72e-01 | 99.1% | 98.8% |
| 5060100 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.89 | 76.0 | 8.05e-01 | 98.7% | 97.0% |
| 5027796 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.88 | 67.0 | 7.54e-01 | 100.0% | 97.7% |
| 5002813 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.86 | 71.0 | 7.41e-01 | 100.0% | 90.0% |
| 5059436 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.86 | 76.0 | 7.68e-01 | 100.0% | 91.8% |
| 5020663 | 10.2.1.104 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Disaggr_repeat | 0.85 | 72.0 | 5.10e-01 | 100.0% | 33.2% |
| 3981402 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.84 | 63.0 | 6.77e-01 | 100.0% | 87.2% |
| 5059807 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.83 | 75.0 | 7.80e-01 | 99.6% | 99.0% |
| 4631012 | 10.2.1.75 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CBM96 | 0.82 | 62.0 | 6.53e-01 | 100.0% | 83.9% |
| 3845898 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.77 | 46.0 | 4.89e-01 | 100.0% | 66.0% |
| 3888045 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.75 | 49.0 | 5.39e-01 | 100.0% | 78.4% |
| 4017877 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.74 | 54.0 | 6.18e-01 | 99.1% | 100.0% |
| 4016959 | 10.32.1.197 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › But2 | 0.73 | 53.0 | 6.10e-01 | 99.6% | 99.4% |
| 3402319 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.72 | 49.0 | 4.99e-01 | 100.0% | 70.0% |
| 4160951 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.70 | 50.0 | 4.94e-01 | 100.0% | 68.5% |
| 4660646 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.70 | 48.0 | 4.70e-01 | 100.0% | 63.3% |
| 4293266 | 10.2.1.97 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGF_beta | 0.69 | 44.0 | 3.92e-01 | 100.0% | 45.5% |
| 3860557 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.69 | 44.0 | 3.72e-01 | 100.0% | 39.8% |
| 1323503 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.69 | 35.0 | 4.10e-01 | 89.2% | 67.3% |
| 3558842 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.66 | 45.0 | 4.43e-01 | 100.0% | 64.4% |
| 1412423 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.64 | 36.0 | 4.63e-01 | 99.1% | 94.5% |
| 4304353 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.64 | 43.0 | 5.08e-01 | 100.0% | 97.4% |
| 1548159 | 10.32.1.67 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_78_N | 0.63 | 41.0 | 4.67e-01 | 100.0% | 85.5% |
| 3941823 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.62 | 41.0 | 4.94e-01 | 100.0% | 100.0% |
| 3968310 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.62 | 40.0 | 4.85e-01 | 98.2% | 100.0% |
| 4136414 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.61 | 41.0 | 4.75e-01 | 99.6% | 93.1% |
| 3713560 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 39.0 | 4.63e-01 | 97.8% | 95.3% |
| 3678413 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.60 | 43.0 | 4.45e-01 | 99.6% | 77.1% |
| 3547156 | 10.32.1.315 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C, Laminin_G_2 | 0.60 | 40.0 | 3.35e-01 | 99.6% | 40.5% |
| 3307805 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.59 | 41.0 | 4.63e-01 | 100.0% | 92.9% |
| 3256840 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.58 | 33.0 | 4.28e-01 | 98.7% | 100.0% |
| 3742780 | 11.1.5.64 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PIG-X | 0.57 | 35.0 | 3.90e-01 | 98.7% | 75.0% |
| 3822933 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.57 | 36.0 | 2.73e-01 | 100.0% | 26.9% |
| 4219528 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.57 | 29.0 | 3.87e-01 | 99.6% | 93.0% |
| 3488380 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.55 | 39.0 | 4.51e-01 | 99.6% | 98.2% |
| 3364648 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 38.0 | 3.58e-01 | 100.0% | 56.7% |
| 3168473 | 10.32.1.306 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF30096 | 0.54 | 42.0 | 4.57e-01 | 100.0% | 94.7% |
| 3821996 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.54 | 36.0 | 3.21e-01 | 100.0% | 46.8% |
| 3545871 | 10.32.1.103 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5918 | 0.53 | 44.0 | 4.55e-01 | 98.7% | 91.2% |
| 3400203 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 31.0 | 3.86e-01 | 94.6% | 99.2% |
| 3827637 | 207.1.1.37 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID | 0.52 | 27.0 | 2.63e-01 | 97.3% | 41.2% |
| 3582725 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.51 | 35.0 | 3.79e-01 | 89.7% | 81.6% |
| 3594020 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 43.0 | 4.51e-01 | 98.7% | 100.0% |
| 3244902 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 31.0 | 3.50e-01 | 87.9% | 77.7% |
D2
high
residues 240-370
Domain cluster:
rep: IMGVR_UViG_3300018013_000490-3300018013-Ga0187873_100144020__D355-451