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IMGVR_UViG_3300000151_000014-3300000151-SI53jan11_200mDRAFT_100057326

Arc-Vir

IMGVR_UViG_3300000151_000014-3300000151-SI53jan11_200mDRAFT_100057326

Identity

Kingdom:
archaea

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-146
PDB
Domain cluster: rep: IMGVR_UViG_3300000172_000157-3300000172-SI34jun09_200mDRAFT_100346313__D21-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01467.33 best CTP_transf_like 27.8 3.50e-06 69.6% 65.4%
D2 high residues 234-367
PDB
Domain cluster: rep: MT157285.1__QIW86072.1__PKP2_20__00020__D36-168
D3 high residues 463-563
PDB
Domain cluster: rep: IMGVR_UViG_3300022912_000067-3300022912-Ga0233430_100360422__D245-345
D4 medium residues 153-197
PDB
Domain cluster: rep: IMGVR_UViG_3300000172_000157-3300000172-SI34jun09_200mDRAFT_100346313__D153-196
D5 medium residues 198-232_377-433
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 56.0 5.17e-01 83.7% 76.3%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 57.0 5.12e-01 90.2% 92.3%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 56.0 4.80e-01 89.1% 94.5%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.68 50.0 5.28e-01 83.7% 88.7%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 52.0 4.78e-01 82.6% 64.2%
1z3iX01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.66 48.0 3.40e-01 88.0% 25.3%
6yttA01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.65 49.0 4.84e-01 80.4% 90.0%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 50.0 4.38e-01 84.8% 56.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 43.0 4.15e-01 70.7% 62.4%
2l81A00 1.20.120.830 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain 0.62 51.0 4.19e-01 90.2% 83.0%
1ie9A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.61 51.0 3.81e-01 95.7% 64.7%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.60 41.0 3.89e-01 70.7% 90.8%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 45.0 4.19e-01 81.5% 93.2%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.59 44.0 4.25e-01 80.4% 72.2%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.58 49.0 4.17e-01 93.5% 72.2%
3dxpA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.58 49.0 3.63e-01 92.4% 66.9%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.57 47.0 4.53e-01 91.3% 84.5%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.56 45.0 4.12e-01 88.0% 85.6%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 42.0 3.43e-01 82.6% 46.1%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 36.0 3.76e-01 79.3% 75.3%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 33.0 3.89e-01 79.3% 93.7%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.52 43.0 3.10e-01 94.6% 66.4%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.52 38.0 4.26e-01 90.2% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3662351 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.74 59.0 5.26e-01 83.7% 64.0%
3382641 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.70 55.0 5.19e-01 83.7% 70.0%
4976283 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.70 49.0 4.60e-01 73.9% 86.1%
5075952 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.69 56.0 5.07e-01 89.1% 85.9%
5079439 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 56.0 5.41e-01 90.2% 95.2%
3634546 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.68 46.0 4.96e-01 81.5% 85.3%
3362718 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.67 52.0 4.79e-01 82.6% 64.2%
4014198 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.66 51.0 4.51e-01 83.7% 64.4%
4025051 601.30.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.65 53.0 4.55e-01 89.1% 88.0%
3513004 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 49.0 4.06e-01 83.7% 50.3%
5009681 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.62 51.0 4.45e-01 90.2% 78.6%
3704014 109.4.1.436 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nipped-B_C 0.62 54.0 3.63e-01 95.7% 54.2%
3606297 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 46.0 3.38e-01 77.2% 71.9%
5063260 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.61 50.0 4.71e-01 89.1% 81.8%
3224363 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.60 47.0 4.94e-01 84.8% 92.9%
3389399 142.1.1.22 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C 0.60 38.0 3.62e-01 91.3% 56.2%
3173369 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.59 52.0 3.52e-01 100.0% 84.2%
3499296 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.58 44.0 3.70e-01 82.6% 58.2%
4033037 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.57 39.0 4.34e-01 70.7% 92.9%
4160719 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.57 47.0 3.95e-01 91.3% 52.5%
4597634 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.57 43.0 4.55e-01 82.6% 92.5%
3974456 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.56 36.0 3.92e-01 91.3% 78.7%
3192563 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 47.0 3.61e-01 95.7% 68.8%
4012592 5050.1.1.55 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1 0.54 48.0 2.98e-01 97.8% 34.5%
4978605 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 46.0 3.37e-01 100.0% 39.3%
4478129 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 34.0 3.49e-01 87.0% 67.8%
3648998 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.52 38.0 3.86e-01 82.6% 77.8%
4511226 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.51 42.0 3.58e-01 90.2% 54.2%
3711163 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.51 42.0 3.46e-01 94.6% 81.7%