←Back to structures

IMGVR_UViG_3300000151_000030-3300000151-SI53jan11_200mDRAFT_10009163

Arc-Vir

IMGVR_UViG_3300000151_000030-3300000151-SI53jan11_200mDRAFT_10009163

Identity

Kingdom:
archaea

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-144
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 42.0 4.38e-01 96.3% 58.7%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.71 41.0 3.42e-01 100.0% 32.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.62 37.0 4.41e-01 88.9% 97.9%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.61 41.0 3.26e-01 93.8% 34.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 33.0 3.78e-01 90.1% 72.9%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 36.0 3.30e-01 96.3% 48.6%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.62e-01 98.8% 63.1%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.56 40.0 3.77e-01 100.0% 60.8%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.55 48.0 4.24e-01 100.0% 96.7%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.97e-01 100.0% 75.8%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.12e-01 100.0% 80.7%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.42e-01 93.8% 87.5%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 34.0 2.90e-01 97.5% 39.9%
4ztkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 3.18e-01 100.0% 56.3%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.92e-01 100.0% 78.3%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 31.0 2.73e-01 86.4% 39.0%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 34.0 3.10e-01 96.3% 49.5%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 47.0 3.16e-01 100.0% 36.7%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 31.0 2.87e-01 96.3% 45.0%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 32.0 2.90e-01 96.3% 44.9%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3659202 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.77 38.0 3.91e-01 93.8% 48.8%
146266 295.1.1.8 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.76 42.0 4.18e-01 97.5% 52.4%
4992847 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.76 43.0 4.52e-01 97.5% 61.3%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 42.0 3.81e-01 96.3% 48.2%
3492699 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 45.0 4.34e-01 100.0% 65.3%
3724886 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.63 45.0 2.99e-01 75.3% 27.0%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 40.0 4.05e-01 100.0% 65.0%
135442 220.1.1.42 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.62 41.0 3.30e-01 96.3% 35.9%
4997159 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.61 38.0 3.08e-01 91.4% 35.2%
None — 0.61 43.0 2.85e-01 72.8% 26.6%
4969129 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 36.0 3.34e-01 91.4% 48.6%
5045588 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 38.0 3.30e-01 96.3% 44.2%
3170444 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.58 43.0 3.27e-01 79.0% 81.5%
3599659 206.1.3.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 0.57 42.0 2.68e-01 100.0% 15.7%
5048392 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.57 43.0 2.94e-01 80.2% 28.8%
3722822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.07e-01 95.1% 26.2%
3402616 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 42.0 3.37e-01 97.5% 42.0%
3430385 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.56 39.0 3.45e-01 80.2% 48.0%
3971184 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 35.0 2.88e-01 92.6% 36.4%
3689179 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.30e-01 97.5% 42.6%
3971331 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 37.0 3.26e-01 96.3% 47.5%
4999857 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 35.0 3.11e-01 96.3% 45.0%
3709987 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 39.0 3.36e-01 93.8% 48.5%
4951491 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 35.0 3.11e-01 96.3% 45.8%
5018462 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 35.0 2.42e-01 96.3% 20.8%
3621147 5.1.4.166 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 0.53 46.0 2.89e-01 95.1% 34.0%
5019943 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 35.0 3.03e-01 96.3% 42.3%
3586630 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 46.0 3.06e-01 95.1% 45.1%
4970454 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 35.0 2.92e-01 97.5% 37.9%
5065470 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 35.0 3.04e-01 96.3% 45.8%
4014614 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.52 41.0 3.35e-01 96.3% 45.3%
4957920 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 35.0 3.13e-01 97.5% 47.8%
5019133 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 34.0 2.92e-01 96.3% 40.0%
4980686 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 34.0 3.16e-01 97.5% 50.0%
3621160 7505.1.1.1 ↗ a/b three-layered sandwiches › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › MKLP1_Arf_bdg 0.52 38.0 3.79e-01 98.8% 74.1%
3206195 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 41.0 2.82e-01 96.3% 24.6%
5019127 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 35.0 2.23e-01 96.3% 14.1%
3731356 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 42.0 3.51e-01 96.3% 52.6%
5045423 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 34.0 2.43e-01 96.3% 22.9%
3971144 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 34.0 2.96e-01 96.3% 43.1%
3179775 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.51 34.0 3.00e-01 96.3% 45.8%
4960112 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 34.0 2.94e-01 96.3% 44.0%
3939484 7579.1.1.70 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.51 44.0 2.91e-01 95.1% 28.0%
4959374 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 34.0 3.06e-01 97.5% 49.6%
4020859 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 35.0 3.09e-01 96.3% 49.2%
D2 medium residues 10-63
PDB
Domain cluster: representative