←Back to structures

IMGVR_UViG_3300000151_000037-3300000151-SI53jan11_200mDRAFT_100110419

Arc-Vir

IMGVR_UViG_3300000151_000037-3300000151-SI53jan11_200mDRAFT_100110419

Identity

Kingdom:
archaea

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-53
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.86 65.0 5.35e-01 100.0% 47.2%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.86 64.0 5.04e-01 100.0% 41.2%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.85 58.0 6.21e-01 92.9% 88.2%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.84 62.0 5.38e-01 97.6% 53.2%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 59.0 4.99e-01 100.0% 47.1%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 57.0 4.36e-01 100.0% 33.3%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 60.0 4.91e-01 97.6% 45.8%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.80 56.0 5.01e-01 95.2% 53.4%
2cuqA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.80 60.0 4.80e-01 100.0% 42.5%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.77 55.0 4.26e-01 100.0% 33.7%
1x6aA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.76 56.0 5.02e-01 100.0% 56.5%
2dsmA00 3.30.40.30 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain 0.76 55.0 4.61e-01 100.0% 45.8%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.74 54.0 4.80e-01 97.6% 54.0%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.73 52.0 4.72e-01 100.0% 55.0%
2iybE00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 50.0 4.44e-01 100.0% 65.6%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.10e-01 73.8% 30.2%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 2.99e-01 71.4% 29.6%
1w4rA02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 44.0 4.47e-01 92.9% 97.6%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 37.0 2.54e-01 83.3% 88.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928404 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.96 68.0 6.98e-01 100.0% 77.5%
5021070 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.93 67.0 7.29e-01 97.6% 91.4%
3922147 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.91 62.0 7.05e-01 92.9% 100.0%
4054302 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.89 63.0 6.22e-01 97.6% 71.1%
3897559 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.88 65.0 7.06e-01 100.0% 94.3%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 60.0 4.37e-01 92.9% 28.6%
3630382 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.87 59.0 6.66e-01 95.2% 100.0%
5046967 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.87 62.0 6.36e-01 100.0% 80.0%
3999023 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.86 63.0 6.22e-01 100.0% 73.3%
3559364 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.86 64.0 6.90e-01 97.6% 94.3%
3506999 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.86 58.0 6.52e-01 92.9% 100.0%
3304089 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 60.0 5.94e-01 97.6% 71.1%
3927094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.84 62.0 5.14e-01 100.0% 47.1%
4994045 377.1.1.134 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7573 0.83 58.0 6.28e-01 100.0% 91.2%
4932324 375.1.5.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.83 52.0 5.85e-01 90.5% 90.0%
4410490 3961.1.1.0 ↗ 0.82 56.0 4.19e-01 100.0% 30.0%
5016275 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.81 56.0 5.97e-01 95.2% 88.6%
3563021 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.80 59.0 4.98e-01 100.0% 48.6%
4929975 375.1.5.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.80 50.0 5.60e-01 90.5% 90.0%
3264964 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 64.0 6.54e-01 100.0% 92.5%
4468915 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 51.0 5.71e-01 92.9% 100.0%
4000690 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.74 58.0 5.49e-01 97.6% 72.0%
None — 0.71 54.0 3.78e-01 100.0% 26.9%
4965510 377.1.1.129 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF6757 0.69 47.0 5.12e-01 92.9% 100.0%
3266881 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 58.0 4.66e-01 100.0% 48.2%
3484196 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 56.0 4.79e-01 100.0% 57.1%
4020739 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 59.0 5.87e-01 100.0% 97.7%
3822188 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.61 42.0 3.52e-01 73.8% 50.0%
4988550 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.56 42.0 3.56e-01 83.3% 74.7%
3510111 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 36.0 3.40e-01 76.2% 87.3%
3982869 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 38.0 3.09e-01 83.3% 56.5%
3603043 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.51 36.0 3.00e-01 85.7% 57.9%
3429406 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 38.0 2.77e-01 100.0% 68.2%
3925138 387.1.1.34 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB 0.50 31.0 3.18e-01 83.3% 65.0%